exit; # BEGINOFOPTIONS # Options for the scene # caption: Detail of insulin bound in site 1 of the insulin receptor. Insulin is shown as cartoon in green and orange. Selected parts of the receptor contacting insulin are shown (sky blue: parts of N-terminal domain L1, dark red: C-terminal alpha helix). PDB ID 6ce9. # captionBgColor: white # captionFontColor: black # spinState: on # doModelReload: false # savePSpeed: -1 # killMove: 1 # killZoom: 1 # animationDirection: 0 # animationMode: PALINDROME # loopPause: 1 # ENDOFOPTIONS # Jmol state version 14.29.16 2018-06-03 23:13; # fullName = "jmolApplet0__6838227717856236__"; # documentBase = "http://proteopedia.org/wiki/index.php?title=User:Karsten_Theis/Insulin&action=edit"; # codeBase = "http:/wiki/extensions/jsmol/j2s/"; function _setWindowState() { # width 350; # height 350; stateVersion = 1429016; background [xffffff]; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; set ambientPercent 45; set diffusePercent 84; set specular true; set specularPercent 22; set specularPower 40; set specularExponent 6; set celShading false; set celShadingPower 10; set zShadePower 3; } function _setFileState() { set allowEmbeddedScripts false; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set autoBond true; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultLattice {0 0 0}; set defaultLoadFilter ""; set defaultLoadScript ""; set defaultStructureDssp true; set defaultVDW Auto; set forceAutoBond false; # set defaultDirectory ""; # set loadFormat "https://files.rcsb.org/download/%FILE.pdb"; # set loadLigandFormat "https://files.rcsb.org/ligands/download/%FILE.cif"; # set smilesUrlFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=true"; # set nihResolverFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE"; # set pubChemFormat "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d"; set bondingVersion 0; set legacyAutoBonding false; set legacyAutoBonding false; set legacyHAddition false; set legacyJavaFloat false; set minBondDistance 0.4; set minimizationCriterion 0.001; set minimizationSteps 100; set multipleBondBananas false; set pdbAddHydrogens false; set pdbGetHeader false; set pdbSequential false; set percentVdwAtom 23; set smallMoleculeMaxAtoms 40000; set smartAromatic true; reloadfile = false; if (loadedfileprev != "065018542545372618282fe2d6d5b804"); load /*file*/"/cgi-bin/getfrozenstructure?065018542545372618282fe2d6d5b804"; loadedfileprev = "065018542545372618282fe2d6d5b804"; reloadfile = true; endif; } function _setParameterState() { set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "Jmol"; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlabelpdb "%m%r"; set defaultlabelxyz "%a"; set defaultlattice "{0 0 0}"; set defaultloadfilter ""; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set defaultvdw "Jmol"; set allowembeddedscripts true; set allowmoveatoms false; set allowrotateselected false; set animationmode "once"; set appletproxy ""; set applysymmetrytobonds false; set atomtypes ""; set autobond true; set autofps false; set axes window; set axesmode 0; set axesoffset 0.0; set axesscale 2.0; set bondmodeor false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonbaseedges false; set cartoonblockheight 0.5; set cartoonblocks false; set cartoonfancy false; set cartoonladders false; set cartoonrockets false; set cartoonsteps false; set chaincasesensitive false; set dataseparator "~~~"; set defaultstructuredssp true; set delaymaximumms 0; set dipolescale 1.0; set disablepopupmenu false; set displaycellparameters true; set dotdensity 3; set dotscale 1; set dotsselectedonly false; set dotsurface true; set dragselected false; set drawfontsize 14.0; set drawhover false; set dsspcalculatehydrogenalways true; set ellipsoidarcs false; set ellipsoidarrows false; set ellipsoidaxes false; set ellipsoidaxisdiameter 0.02; set ellipsoidball true; set ellipsoiddotcount 200; set ellipsoiddots false; set ellipsoidfill false; set energyunits "kJ"; set forceautobond false; set gestureswipefactor 1.0; set greyscalerendering false; set hbondsbackbone false; set hbondsrasmol true; set hbondssolid false; set helixstep 1; set helppath "https://chemapps.stolaf.edu/jmol/docs/index.htm"; set hermitelevel 0; set hiddenlinesdashed false; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set hoverdelay 0.5; set infofontsize 20; set isosurfacekey false; set isosurfacepropertysmoothing true; set isosurfacepropertysmoothingpower 7; set jmolinjspecview true; set justifymeasurements false; set loadatomdatatolerance 0.01; set measureallmodels false; set measurementlabels true; set meshscale 1; set messagestylechime false; set minbonddistance 0.4; set minimizationcriterion 0.001; set minimizationrefresh true; set minimizationsilent false; set minimizationsteps 100; set minpixelselradius 6; set modulationscale 1.0; set monitorenergy false; set multiplebondbananas false; set multiplebondradiusfactor 0.0; set multiplebondspacing -1.0; set navigationperiodic false; set navigationspeed 5.0; set nbocharges true; set nmrpredictformat "http://www.nmrdb.org/service/predictor?POST?molfile="; set nmrurlformat "http://www.nmrdb.org/new_predictor?POST?molfile="; set partialdots false; set particleradius 20.0; set pdbaddhydrogens false; set pdbgetheader false; set pdbsequential false; set percentvdwatom 23; set pickingspinrate 10; set pointgroupdistancetolerance 0.2; set pointgrouplineartolerance 8.0; set propertyatomnumbercolumncount 0; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatacolumncount 0; set propertydatafield 0; set quaternionframe "p"; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showmeasurements true; set showmodulationvectors false; set showmultiplebonds true; set shownavigationpointalways false; set showunitcelldetails true; set slabbyatom false; set slabbymolecule false; set smallmoleculemaxatoms 40000; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone true; set starwidth 0.05; set stereodegrees -5; set strandcountformeshribbon 7; set strandcountforstrands 5; set strutdefaultradius 0.3; set strutlengthmaximum 7.0; set strutsmultiple false; set strutspacing 6; set tracealpha true; set translucent true; set twistedsheets false; set usenumberlocalization true; set vectorscale 1.0; set vectorscentered false; set vectorsymmetry false; set vectortrail 0; set vibrationscale 1.0; set waitformoveto true; set wireframerotation false; set zdepth 0; set zoomheight false; set zoomlarge true; set zslab 50; # user-defined atom sets; @~anomalous_atoms ({}); @~backbone_invisible ({}); @~hydroxy_unchained_nucs ({}); @~nobackbone_aas ({}); @~nophosphorus_nucs ({}); @~protein ({0:10391}); @~unbondable_aas ({}); @~unchained_aas ({}); @~unchained_nucs ({}); } function _setModelState() { calculate hbonds; select all; wireframe off; spacefill off; dots off; backbone off; trace off; ribbon off; cartoon off; strands off; rocket off; meshribbon off; isosurface off; halos off; color cpk; hbonds off; select ({77 85 88 89 101 112 115 246 264 268 281 289 305 316 485 493 521 532 550 558 799 803 804 994 2112 10142 10146 10151 10159 10167 10176 10180 10181 10185 10193 10197 10198 10202 10206 10207 10211 10213 10217 10219 10223 10234 10245 10254 10256 10261 10272 10276 10277 10281 10284 10285 10289 10297 10301 10309 10319 10322 10327 10334 10341 10352 10359 10366 10371 10378 10380 10384}); Spacefill 1.7; select ({75 76 78 79 81 83 84 86 87 99 100 102:104 106 110 111 113 114 244 245 247 248 250 251 262 263 265:267 279 280 282:285 287 288 290:293 303 304 306:312 314 315 317:320 483 484 486:492 519 520 522:528 530 531 533:535 537 548 549 551:557 797 798 800:802 992 993 995:998 2110 2111 2113 10140 10141 10143:10145 10149 10150 10152:10155 10157 10158 10160:10163 10165 10166 10168:10171 10174 10175 10177:10179 10183 10184 10186:10189 10191 10192 10194:10196 10200 10201 10203:10205 10209 10210 10212 10215 10216 10218 10221 10222 10224:10230 10232 10233 10235:10237 10239 10243 10244 10246:10249 10252 10253 10255 10257 10259 10260 10262:10268 10270 10271 10273:10275 10279 10280 10282 10283 10287 10288 10290:10296 10299 10300 10302:10305 10307 10308 10310 10311 10313 10314 10317 10318 10320 10321 10325 10326 10328:10330 10332 10333 10335:10337 10339 10340 10342:10348 10350 10351 10353:10355 10357 10358 10360:10362 10364 10365 10367 10369 10370 10372:10374 10376 10377 10379 10382 10383 10385:10387 10389}); Spacefill 1.95; select ({80 2114}); Spacefill 2; select ({9736:9898}); color atoms opaque [x008000]; select ({74 82 98 105 107:109 116 243 249 252 261 269 278 286 302 313 321 482 518 529 536 538 539 547 796 991 999 2109 10139 10147 10148 10156 10164 10172 10173 10182 10190 10199 10208 10214 10220 10231 10238 10240:10242 10250 10251 10258 10269 10278 10286 10298 10306 10312 10315 10316 10323 10324 10331 10338 10349 10356 10363 10368 10375 10381 10388 10390 10391}); Spacefill 1.85; select ({0:9735}); color atoms opaque chain; select ({9899:10138}); color atoms opaque [xffa500]; select ({0:73 90:97 117:242 253:260 270:277 294:301 322:481 494:517 540:546 559:795 805:990 1000:2108 2115:10138 10392:10781}); Spacefill 0; select ({10139:10391}); color atoms opaque [xb22222]; select BONDS ({0 4:11 13:16 19 20 24:31 33:36 39:41}); color bonds opaque [xffff30]; select BONDS ({0:11079}); wireframe 0; select ({9736:10138}); Cartoon on; hover "%U"; frank on; font frank 16 SansSerif Plain; select *; set fontScaling false; } function _setPerspectiveState() { if (reloadfile) { set perspectiveModel 11; } set scaleAngstromsPerInch 0; set perspectiveDepth true; set visualRange 5; set cameraDepth 3; boundbox corners {115.25900000000001 88.79499999999999 127.023} {199.301 227.917 200.201} # volume = 855603.8442720717; if (reloadfile) { center {127.42731081081085 186.2934324324324 167.5860675675676}; } # removed moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {157.28 158.356 163.612} 74.85925020802222 {0 0 0} 0 0 0 3.0 0.0 0.0; # removed save orientation "default"; slab 100;depth 0; set slabRange 0.0; set spinX = 0; set spinY = 5; set spinZ = 0; spinFps = 20; spin axisangle {0.0 1.0 0.0} 10.0; } function _setSelectionState() { select ({74:89 98:116 243:252 261:269 278:293 302:321 482:493 518:539 547:558 796:804 991:999 2109:2114}); set hideNotSelected false; } function _setState() { # # initialize; # update caption ppdiaCaptionCmd = "changeCaption('Detail of insulin bound in site 1 of the insulin receptor. Insulin is shown as cartoon in green and orange. Selected parts of the receptor contacting insulin are shown (sky blue: parts of N-terminal domain L1, dark red: C-terminal alpha helix). PDB ID 6ce9.','white','black');"; javascript @ppdiaCaptionCmd; select all; labels off; measurements off; set refreshing false; _setWindowState; _setFileState; _setParameterState; _setModelState; _setPerspectiveState; _setSelectionState; set refreshing false; SelectionHalos OFF; delay 1.0; moveto 1.0 { -765 578 -284 76.06} 577.78 0.0 0.0 {127.42731081081085 186.2934324324324 167.5860675675676} 112.097169463893 {0 0 0} 0 0 0 3.0 0.0 0.0;; set refreshing true; if (antialiasDisplayFlag) { antialiasDisplay = true } else { antialiasDisplay = false }; set antialiasTranslucent true; set antialiasImages true; spin on; } _setState;