exit; # BEGINOFOPTIONS # Options for the scene # caption: Ribbon view of a monomer of mature insulin (chain A in green, chain B in orange, disulfide bridges in yellow), with contacts to receptor site 1 highlighted in red and orange and to site 2 in blue and skyblue. PDB ID 4ins. # captionBgColor: white # captionFontColor: black # spinState: on # doModelReload: false # savePSpeed: -1 # killMove: 1 # killZoom: 0 # animationDirection: # animationMode: PALINDROME # loopPause: 1 # ENDOFOPTIONS # Jmol state version 14.29.16 2018-06-03 23:13; # fullName = "jmolApplet0__065464091515464__"; # documentBase = "http://proteopedia.org/wiki/index.php?title=User:Karsten_Theis/Insulin&action=edit"; # codeBase = "http:/wiki/extensions/jsmol/j2s/"; function _setWindowState() { # width 350; # height 350; stateVersion = 1429016; background [x000000]; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; set ambientPercent 45; set diffusePercent 84; set specular true; set specularPercent 22; set specularPower 40; set specularExponent 6; set celShading false; set celShadingPower 10; set zShadePower 2; } function _setFileState() { set allowEmbeddedScripts false; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set autoBond true; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultLattice {0 0 0}; set defaultLoadFilter ""; set defaultLoadScript ""; set defaultStructureDssp true; set defaultVDW Auto; set forceAutoBond false; # set defaultDirectory ""; # set loadFormat "https://files.rcsb.org/download/%FILE.pdb"; # set loadLigandFormat "https://files.rcsb.org/ligands/download/%FILE.cif"; # set smilesUrlFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=true"; # set nihResolverFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE"; # set pubChemFormat "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d"; set bondingVersion 0; set legacyAutoBonding false; set legacyAutoBonding false; set legacyHAddition false; set legacyJavaFloat false; set minBondDistance 0.4; set minimizationCriterion 0.001; set minimizationSteps 100; set multipleBondBananas false; set pdbAddHydrogens false; set pdbGetHeader false; set pdbSequential false; set percentVdwAtom 23; set smallMoleculeMaxAtoms 40000; set smartAromatic true; reloadfile = false; if (loadedfileprev != "6ad5dfaced99e610859115fe197f5ef6"); load /*file*/"/cgi-bin/getfrozenstructure?6ad5dfaced99e610859115fe197f5ef6"; loadedfileprev = "6ad5dfaced99e610859115fe197f5ef6"; reloadfile = true; endif; } function _setParameterState() { set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "jmol"; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlabelpdb "%m%r"; set defaultlabelxyz "%a"; set defaultlattice "{0 0 0}"; set defaultloadfilter ""; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set defaultvdw "Jmol"; set allowembeddedscripts true; set allowmoveatoms false; set allowrotateselected false; set animationmode "once"; set appletproxy ""; set applysymmetrytobonds false; set atomtypes ""; set autobond true; set autofps false; set axes window; set axesmode 0; set axesoffset 0.0; set axesscale 2.0; set bondmodeor false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonbaseedges false; set cartoonblockheight 0.5; set cartoonblocks false; set cartoonfancy false; set cartoonladders false; set cartoonrockets false; set cartoonsfancy false; set cartoonsteps false; set chaincasesensitive false; set dataseparator "~~~"; set defaultstructuredssp true; set delaymaximumms 0; set dipolescale 1.0; set disablepopupmenu false; set displaycellparameters true; set dotdensity 3; set dotscale 1; set dotsselectedonly false; set dotsurface true; set dragselected false; set drawfontsize 14.0; set drawhover false; set dsspcalculatehydrogenalways true; set ellipsoidarcs false; set ellipsoidarrows false; set ellipsoidaxes false; set ellipsoidaxisdiameter 0.02; set ellipsoidball true; set ellipsoiddotcount 200; set ellipsoiddots false; set ellipsoidfill false; set energyunits "kJ"; set forceautobond false; set gestureswipefactor 1.0; set greyscalerendering false; set hbondsbackbone false; set hbondsrasmol true; set hbondssolid false; set helixstep 1; set helppath "https://chemapps.stolaf.edu/jmol/docs/index.htm"; set hermitelevel 0; set hiddenlinesdashed false; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set hoverdelay 0.5; set infofontsize 20; set isosurfacekey false; set isosurfacepropertysmoothing true; set isosurfacepropertysmoothingpower 7; set jmolinjspecview true; set justifymeasurements false; set loadatomdatatolerance 0.01; set measureallmodels false; set measurementlabels true; set meshscale 1; set messagestylechime false; set minbonddistance 0.4; set minimizationcriterion 0.001; set minimizationrefresh true; set minimizationsilent false; set minimizationsteps 100; set minpixelselradius 6; set modulationscale 1.0; set monitorenergy false; set multiplebondbananas false; set multiplebondradiusfactor 0.0; set multiplebondspacing -1.0; set navigationperiodic false; set navigationspeed 5.0; set nbocharges true; set nmrpredictformat "http://www.nmrdb.org/service/predictor?POST?molfile="; set nmrurlformat "http://www.nmrdb.org/new_predictor?POST?molfile="; set partialdots false; set particleradius 20.0; set pdbaddhydrogens false; set pdbgetheader false; set pdbsequential false; set percentvdwatom 23; set pickingspinrate 10; set pointgroupdistancetolerance 0.2; set pointgrouplineartolerance 8.0; set propertyatomnumbercolumncount 0; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatacolumncount 0; set propertydatafield 0; set quaternionframe "p"; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showmeasurements true; set showmodulationvectors false; set showmultiplebonds true; set shownavigationpointalways false; set showunitcelldetails true; set slabbyatom false; set slabbymolecule false; set smallmoleculemaxatoms 40000; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone false; set starwidth 0.05; set stereodegrees -5.0; set strandcountformeshribbon 7; set strandcountforstrands 5; set strutdefaultradius 0.3; set strutlengthmaximum 7.0; set strutsmultiple false; set strutspacing 6; set tracealpha true; set translucent true; set twistedsheets false; set usenumberlocalization true; set vectorscale 1.0; set vectorscentered false; set vectorsymmetry false; set vectortrail 0; set vibrationscale 1.0; set waitformoveto true; set wireframerotation false; set zdepth 0; set zoomheight false; set zoomlarge true; set zslab 50; # user-defined atom sets; @~anomalous_atoms ({}); @~backbone_invisible ({}); @~hydroxy_unchained_nucs ({}); @~nobackbone_aas ({}); @~nophosphorus_nucs ({}); @~protein ({0:829}); @~unbondable_aas ({}); @~unchained_aas ({}); @~unchained_nucs ({}); } function _setModelState() { calculate hbonds; select all; wireframe off; spacefill off; dots off; backbone off; trace off; ribbon off; cartoon off; strands off; rocket off; meshribbon off; isosurface off; halos off; color cpk; hbonds off; data "connect_atoms" 651 638 8192 0.0 -1.428 hbond; 669 644 10240 0.0 -1.513 hbond; 676 648 10240 0.0 -1.867 hbond; 685 654 10240 0.0 -1.6320000000000001 hbond; 690 664 10240 0.0 -1.988999999 hbond; 698 672 10240 0.0 -2.496 hbond; 710 679 10240 0.0 -2.111 hbond; 718 688 10240 0.0 -2.471 hbond; 725 693 10240 0.0 -2.7880000000000003 hbond; 731 701 10240 0.0 -2.253 hbond; 744 728 8192 0.0 -1.915 hbond; 759 734 8192 0.0 -1.278 hbond; 824 800 8192 0.0 -1.098 hbond; 489 611 4096 0.0 -2.032 hbond; 573 762 4096 0.0 -1.929 hbond; 354 788 4096 0.0 -1.758 hbond; 376 766 4096 0.0 -2.865 hbond; 447 422 10240 0.0 -2.129 hbond; 456 426 10240 0.0 -2.55 hbond; 462 434 10240 0.0 -1.808 hbond; 468 434 12288 0.0 -2.3 hbond; 475 441 12288 0.0 -1.686 hbond; 530 498 10240 0.0 -1.461 hbond; 538 504 10240 0.0 -1.252 hbond; 547 524 8192 0.0 -1.655 hbond; 555 533 8192 0.0 -1.734 hbond; 567 541 8192 0.0 -1.085 hbond; 608 492 4096 0.0 -2.18 hbond; 627 459 4096 0.0 -2.864 hbond; 774 558 4096 0.0 -2.016 hbond; 236 223 8192 0.0 -1.499 hbond; 246 229 8192 0.0 -1.209 hbond; 254 229 10240 0.0 -1.0 hbond; 263 233 10240 0.0 -1.85 hbond; 272 239 10240 0.0 -1.8860000000000001 hbond; 277 249 10240 0.0 -2.262 hbond; 285 257 10240 0.0 -2.081 hbond; 297 266 10240 0.0 -2.377 hbond; 305 275 10240 0.0 -2.8200000000000003 hbond; 312 280 10240 0.0 -2.666 hbond; 318 288 10240 0.0 -1.724 hbond; 335 315 8192 0.0 -2.404 hbond; 350 321 8192 0.0 -1.74 hbond; 763 379 4096 0.0 -1.752 hbond; 785 357 4096 0.0 -2.9 hbond; 70 192 4096 0.0 -2.056 hbond; 154 353 4096 0.0 -2.485 hbond; 28 3 10240 0.0 -2.738 hbond; 37 7 10240 0.0 -2.761 hbond; 43 15 10240 0.0 -0.963 hbond; 49 22 10240 0.0 -3.454 hbond; 56 31 10240 0.0 -1.437 hbond; 111 79 10240 0.0 -1.766 hbond; 119 85 10240 0.0 -1.496999999 hbond; 128 105 8192 0.0 -1.623 hbond; 136 114 8192 0.0 -2.212 hbond; 148 122 8192 0.0 -1.313 hbond; 189 73 4096 0.0 -3.455 hbond; 212 40 4096 0.0 -2.007 hbond; 365 139 4096 0.0 -1.65 hbond; 42 38 1 0.6 0.0 single; 75 71 1 0.6 0.0 single; 153 149 1 0.6 0.0 single; 48 44 1 0.6 0.0 single; 225 221 1 0.6 0.0 single; 317 313 1 0.4 0.0 single; end "connect_atoms"; select ({419:426 431:434 438:441 447:450 456 458 459 462 464 465 468:471 475:478 481:484 489 491 492 495:498 501:504 509:512 521:524 530:533 538:541 547:550 555:558 567 569 570 573:576 581:585 593:596 600:603 608:611 617:620 627:630 635 637 638 641:648 651:654 661:664 669:672 676:679 685:688 690:693 698:701 710:713 718:721 725 727 728 731:738 744:747 759:766 774:777 785:788 797:800 804:807 811:814 824:827 829}); color atoms opaque [xffffff]; select ({258:262 380:387}); color atoms opaque [xff0000]; select ({86:89 301:304}); color atoms opaque [x0000ff]; select ({0 2:4 6:12 14:19 21:28 30:37 39:43 45:49 51:56 58:62 64:70 72:76 78:82 84 85 90 92 93 102 104:111 113:119 121:128 130:136 138:148 150:154 156:163 165:174 176:181 183:189 191:194 196 198 200 202 204:212 214:220 222:226 228:230 232 233 236 238:246 248:254 256 257 263 265:272 274 275 277 279:285 287:297 299 300 305 307 308 312 314 315 318 320:322 324:327 329 331 333 335 337:342 344 346 348 350 352:354 356 357 365 367 368 376 378 379 388 390:393 395 397 399:404 406:413 415:418 427:430 435:437 442:446 451:455 457 460 461 463 466 467 472:474 479 480 485:488 490 493 494 499 500 505:508 513:520 525:529 534:537 542:546 551:554 559:566 568 571 572 577:580 586:592 597:599 604:607 612:616 621:626 631:634 636 639 640 649 650 655:660 665:668 673:675 680:684 689 694:697 702:709 714:717 722:724 726 729 730 739:743 748:758 767:773 778:784 789:796 801:803 808:810 815:823 828 830}); color atoms opaque chain; select ({164 175 182 190 203 213 221 227 231 234 235 237 247 255 264 273 278 286 298 306 313 316 317 319 323 336 351 355 358:364 366 369:375 377 389 398 405 414}); color atoms opaque [xffa500]; select ({1 5 13 20 29 38 44 50 57 63 71 77 83 91 103 112 120 129 137 149 155}); color atoms opaque [x32cd32]; select ({94:101 276 309:311}); color atoms opaque [x87ceeb]; select ({0:1181}); Spacefill 0; select BONDS ({3:93 98:102 112:241 243:245 247:267 269:271 276:288 290:313 318:322 326 327 329 330 332:372 381:385 394 396 397 406:953}); wireframe 0; select BONDS ({0:2 4:6 954:959}); color bonds opaque [xffff00]; select BONDS ({94:97 268 272:275 314:317 395 398:405}); wireframe 0.4; select BONDS ({0:2 954:958}); wireframe 0.3; select BONDS ({103:111 242 246 289 323:325 328 331 373:380 386:393 959}); wireframe 0.2; select ({0:418}); Cartoon on; hover "%U"; frank on; font frank 16 SansSerif Plain; select *; set fontScaling false; } function _setPerspectiveState() { if (reloadfile) { set perspectiveModel 11; } set scaleAngstromsPerInch 0; set perspectiveDepth true; set visualRange 5; set cameraDepth 3; boundbox corners {-23.436 -1.9529999999999994 -19.370000000000005} {27.252000000000002 25.048 33.2} # volume = 71948.70498816001; if (reloadfile) { center {-10.351811455847255 10.52822434367541 4.868241050119328}; } # removed moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {1.9079999999999995 11.5475 6.915000000000001} 36.31468539868592 {0 0 0} 0 0 0 3.0 0.0 0.0; # removed save orientation "default"; slab 100;depth 0; set slabRange 0.0; set zShade true; set spinX = 0; set spinY = 5; set spinZ = 0; spinFps = 20; spin axisangle {0.0 1.0 0.0} 10.0; } function _setSelectionState() { select ({94:101 276 309:311}); set hideNotSelected false; } function _setState() { # # initialize; # update caption ppdiaCaptionCmd = "changeCaption('Ribbon view of a monomer of mature insulin (chain A in green, chain B in orange, disulfide bridges in yellow), with contacts to receptor site 1 highlighted in red and orange and to site 2 in blue and skyblue. PDB ID 4ins.','white','black');"; javascript @ppdiaCaptionCmd; zoomto 1.0 100; delay 0.5; select all; labels off; measurements off; set refreshing false; _setWindowState; _setFileState; _setParameterState; _setModelState; _setPerspectiveState; _setSelectionState; set refreshing true; SelectionHalos OFF; delay 1.0; moveto 1.0 { 113 291 950 102.28} 100.0 0.0 0.0 {-10.351811455847255 10.52822434367541 4.868241050119328} 46.810887883767975 {0 0 0} 0 0 0 3.0 0.0 0.0;; moveto 1.0 { 113 291 950 102.28} 264.5 0.0 0.0 {-10.351811455847255 10.52822434367541 4.868241050119328} 46.810887883767975 {0 0 0} 0 0 0 3.0 0.0 0.0;; set refreshing true; if (antialiasDisplayFlag) { antialiasDisplay = true } else { antialiasDisplay = false }; set antialiasTranslucent true; set antialiasImages true; spin on; } _setState;