exit; # BEGINOFOPTIONS # Options for the scene # caption: Spacefilling view of single insulin molecule (main chain carbon atoms in white, side chains colored by element, charge or hydrophobic/hydrophilic). PDB ID 4ins. # captionBgColor: white # captionFontColor: black # spinState: on # doModelReload: true # savePSpeed: -1 # killMove: 1 # killZoom: 1 # animationDirection: # animationMode: PALINDROME # loopPause: 1 # ENDOFOPTIONS # Jmol state version 14.29.16 2018-06-03 23:13; # fullName = "jmolApplet0__173158595133263__"; # documentBase = "http://proteopedia.org/wiki/index.php?title=User:Karsten_Theis/Insulin&action=edit§ion=3"; # codeBase = "http:/wiki/extensions/jsmol/j2s/"; function _setWindowState() { # width 350; # height 350; stateVersion = 1429016; background [xffffff]; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; set ambientPercent 45; set diffusePercent 84; set specular true; set specularPercent 22; set specularPower 40; set specularExponent 6; set celShading false; set celShadingPower 10; set zShadePower 3; } function _setFileState() { set allowEmbeddedScripts false; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set autoBond true; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultLattice {0 0 0}; set defaultLoadFilter ""; set defaultLoadScript ""; set defaultStructureDssp true; set defaultVDW Auto; set forceAutoBond false; # set defaultDirectory ""; # set loadFormat "https://files.rcsb.org/download/%FILE.pdb"; # set loadLigandFormat "https://files.rcsb.org/ligands/download/%FILE.cif"; # set smilesUrlFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=true"; # set nihResolverFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE"; # set pubChemFormat "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d"; set bondingVersion 0; set legacyAutoBonding false; set legacyAutoBonding false; set legacyHAddition false; set legacyJavaFloat false; set minBondDistance 0.4; set minimizationCriterion 0.001; set minimizationSteps 100; set multipleBondBananas false; set pdbAddHydrogens false; set pdbGetHeader false; set pdbSequential false; set percentVdwAtom 23; set smallMoleculeMaxAtoms 40000; set smartAromatic true; reloadfile = false; load /*file*/"/cgi-bin/getfrozenstructure?6ad5dfaced99e610859115fe197f5ef6"; reloadfile = true; } function _setParameterState() { set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "jmol"; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlabelpdb "%m%r"; set defaultlabelxyz "%a"; set defaultlattice "{0 0 0}"; set defaultloadfilter ""; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set defaultvdw "Jmol"; set allowembeddedscripts true; set allowmoveatoms false; set allowrotateselected false; set animationmode "once"; set appletproxy ""; set applysymmetrytobonds false; set atomtypes ""; set autobond true; set autofps false; set axes window; set axesmode 0; set axesoffset 0.0; set axesscale 2.0; set bondmodeor false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonbaseedges false; set cartoonblockheight 0.5; set cartoonblocks false; set cartoonfancy false; set cartoonladders false; set cartoonrockets false; set cartoonsfancy false; set cartoonsteps false; set chaincasesensitive false; set dataseparator "~~~"; set defaultstructuredssp true; set delaymaximumms 0; set dipolescale 1.0; set disablepopupmenu false; set displaycellparameters true; set dotdensity 3; set dotscale 1; set dotsselectedonly false; set dotsurface true; set dragselected false; set drawfontsize 14.0; set drawhover false; set dsspcalculatehydrogenalways true; set ellipsoidarcs false; set ellipsoidarrows false; set ellipsoidaxes false; set ellipsoidaxisdiameter 0.02; set ellipsoidball true; set ellipsoiddotcount 200; set ellipsoiddots false; set ellipsoidfill false; set energyunits "kJ"; set forceautobond false; set gestureswipefactor 1.0; set greyscalerendering false; set hbondsbackbone false; set hbondsrasmol true; set hbondssolid false; set helixstep 1; set helppath "https://chemapps.stolaf.edu/jmol/docs/index.htm"; set hermitelevel 0; set hiddenlinesdashed false; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set hoverdelay 0.5; set infofontsize 20; set isosurfacekey false; set isosurfacepropertysmoothing true; set isosurfacepropertysmoothingpower 7; set jmolinjspecview true; set justifymeasurements false; set loadatomdatatolerance 0.01; set measureallmodels false; set measurementlabels true; set meshscale 1; set messagestylechime false; set minbonddistance 0.4; set minimizationcriterion 0.001; set minimizationrefresh true; set minimizationsilent false; set minimizationsteps 100; set minpixelselradius 6; set modulationscale 1.0; set monitorenergy false; set multiplebondbananas false; set multiplebondradiusfactor 0.0; set multiplebondspacing -1.0; set navigationperiodic false; set navigationspeed 5.0; set nbocharges true; set nmrpredictformat "http://www.nmrdb.org/service/predictor?POST?molfile="; set nmrurlformat "http://www.nmrdb.org/new_predictor?POST?molfile="; set partialdots false; set particleradius 20.0; set pdbaddhydrogens false; set pdbgetheader false; set pdbsequential false; set percentvdwatom 23; set pickingspinrate 10; set pointgroupdistancetolerance 0.2; set pointgrouplineartolerance 8.0; set propertyatomnumbercolumncount 0; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatacolumncount 0; set propertydatafield 0; set quaternionframe "p"; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showmeasurements true; set showmodulationvectors false; set showmultiplebonds true; set shownavigationpointalways false; set showunitcelldetails true; set slabbyatom false; set slabbymolecule false; set smallmoleculemaxatoms 40000; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone true; set starwidth 0.05; set stereodegrees -5.0; set strandcountformeshribbon 7; set strandcountforstrands 5; set strutdefaultradius 0.3; set strutlengthmaximum 7.0; set strutsmultiple false; set strutspacing 6; set tracealpha true; set translucent true; set twistedsheets false; set usenumberlocalization true; set vectorscale 1.0; set vectorscentered false; set vectorsymmetry false; set vectortrail 0; set vibrationscale 1.0; set waitformoveto true; set wireframerotation false; set zdepth 0; set zoomheight false; set zoomlarge true; set zslab 50; # user-defined atom sets; @~anomalous_atoms ({}); @~backbone_invisible ({}); @~hydroxy_unchained_nucs ({}); @~nobackbone_aas ({}); @~nophosphorus_nucs ({}); @~protein ({0:829}); @~unbondable_aas ({}); @~unchained_aas ({}); @~unchained_nucs ({}); } function _setModelState() { calculate hbonds; select all; wireframe off; spacefill off; dots off; backbone off; trace off; ribbon off; cartoon off; strands off; rocket off; meshribbon off; isosurface off; halos off; color cpk; hbonds off; data "connect_atoms" 651 638 8192 0.0 -1.428 hbond; 669 644 10240 0.0 -1.513 hbond; 676 648 10240 0.0 -1.867 hbond; 685 654 10240 0.0 -1.6320000000000001 hbond; 690 664 10240 0.0 -1.9889999999999999 hbond; 698 672 10240 0.0 -2.496 hbond; 710 679 10240 0.0 -2.111 hbond; 718 688 10240 0.0 -2.471 hbond; 725 693 10240 0.0 -2.7880000000000003 hbond; 731 701 10240 0.0 -2.253 hbond; 744 728 8192 0.0 -1.915 hbond; 759 734 8192 0.0 -1.278 hbond; 824 800 8192 0.0 -1.098 hbond; 489 611 4096 0.0 -2.032 hbond; 573 762 4096 0.0 -1.929 hbond; 354 788 4096 0.0 -1.758 hbond; 376 766 4096 0.0 -2.865 hbond; 447 422 10240 0.0 -2.129 hbond; 456 426 10240 0.0 -2.55 hbond; 462 434 10240 0.0 -1.808 hbond; 468 434 12288 0.0 -2.3 hbond; 475 441 12288 0.0 -1.686 hbond; 530 498 10240 0.0 -1.461 hbond; 538 504 10240 0.0 -1.252 hbond; 547 524 8192 0.0 -1.655 hbond; 555 533 8192 0.0 -1.734 hbond; 567 541 8192 0.0 -1.085 hbond; 608 492 4096 0.0 -2.18 hbond; 627 459 4096 0.0 -2.864 hbond; 774 558 4096 0.0 -2.016 hbond; 236 223 8192 0.0 -1.499 hbond; 246 229 8192 0.0 -1.209 hbond; 254 229 10240 0.0 -1.0 hbond; 263 233 10240 0.0 -1.85 hbond; 272 239 10240 0.0 -1.8860000000000001 hbond; 277 249 10240 0.0 -2.262 hbond; 285 257 10240 0.0 -2.081 hbond; 297 266 10240 0.0 -2.377 hbond; 305 275 10240 0.0 -2.8200000000000003 hbond; 312 280 10240 0.0 -2.666 hbond; 318 288 10240 0.0 -1.724 hbond; 335 315 8192 0.0 -2.404 hbond; 350 321 8192 0.0 -1.74 hbond; 763 379 4096 0.0 -1.752 hbond; 785 357 4096 0.0 -2.9 hbond; 70 192 4096 0.0 -2.056 hbond; 154 353 4096 0.0 -2.485 hbond; 28 3 10240 0.0 -2.738 hbond; 37 7 10240 0.0 -2.761 hbond; 43 15 10240 0.0 -0.963 hbond; 49 22 10240 0.0 -3.454 hbond; 56 31 10240 0.0 -1.437 hbond; 111 79 10240 0.0 -1.766 hbond; 119 85 10240 0.0 -1.4969999999999999 hbond; 128 105 8192 0.0 -1.623 hbond; 136 114 8192 0.0 -2.212 hbond; 148 122 8192 0.0 -1.313 hbond; 189 73 4096 0.0 -3.455 hbond; 212 40 4096 0.0 -2.007 hbond; 365 139 4096 0.0 -1.65 hbond; end "connect_atoms"; select ({0:25 28:34 37:41 43:47 49:53 55:60 62:74 76:80 82:100 102:108 111:125 128:133 136:146 148:152 154:159 162:166 174:177 181:184 189:192 202:205 212:215 220:223 226:233 236:239 246:249 254:257 263:266 272:275 277:280 285:288 297:300 305:308 312:315 318:325 335:338 350:357 365:368 376:379 388:391 397:400 404:407 413:416 418:426 431:434 438:441 447:450 456:459 462:465 468:471 475:478 481:484 489:492 495:498 501:504 509:512 521:524 530:533 538:541 547:550 555:558 567:570 573:576 581:585 593:596 600:603 608:611 617:620 627:630 635:638 641:648 651:654 661:664 669:672 676:679 685:688 690:693 698:701 710:713 718:721 725:728 731:738 744:747 759:766 774:777 785:788 797:800 804:807 811:814 824:827 829}); color atoms opaque [xffffff]; select ({830}); Spacefill 1.39; select ({427:430 435:437 442:446 451:455 460 461 466 467 472:474 479 480 485:488 493 494 499 500 505:508 513:520 525:529 534:537 542:546 551:554 559:566 571 572 577:580 586:592 597:599 604:607 612:616 621:626 631:634 639 640 649 650 655:660 665:668 673:675 680:684 689 694:697 702:709 714:717 722:724 729 730 739:743 748:758 767:773 778:784 789:796 801:803 808:810 815:823 828}); color atoms opaque chain; select ({3 7 15 22 26 27 31 35 40 46 52 54 59 61 65 73 79 81 85 93 101 105 109 114 122 126 127 131 134 139 147 151 157 160 162 166 177 184 187 192 198 205 215 223 229 233 235 239 249 257 266 270 271 275 280 288 296 300 308 315 321 325 331 333 338 353 357 368 379 387 391 393 400 407 416 418}); Spacefill 1.7; select ({0 4 12 19 28 36 37 43 49 56 62 70 76 82 90 102 110 111 119 128 135 136 148 154 161 163 174 181 188 189 200 202 208 211 212 220 226 230 236 242 245 246 254 263 272 277 285 297 305 312 318 322 335 342 346 348 350 354 365 376 388 397 404 412 413}); Spacefill 1.85; select ({42 48 75 153 225 317}); Spacefill 2.001; select ({1 2 5 6 8:11 13 14 16:18 20 21 23:25 29 30 32:34 38 39 41 44 45 47 50 51 53 55 57 58 60 63 64 66:69 71 72 74 77 78 80 83 84 86:89 91 92 94:100 103 104 106:108 112 113 115:118 120 121 123:125 129 130 132 133 137 138 140:146 149 150 152 155 156 158 159 164 165 167:173 175 176 178:180 182 183 185 186 190 191 193 194 196 203 204 206 207 209 210 213 214 216:219 221 222 224 227 228 231 232 234 237 238 240 241 243 244 247 248 250:253 255 256 258 259 261 264 265 267:269 273 274 276 278 279 281:284 286 287 289:295 298 299 301:304 306 307 309:311 313 314 316 319 320 323 324 326 327 329 336 337 339:341 344 351 352 355 356 358:364 366 367 369:375 377 378 380:386 389 390 392 395 398 399 401:403 405 406 408:411 414 415 417}); Spacefill 1.95; select ({195 197 199 201 260 262 328 330 332 334 343 345 347 349 394 396 419:829 831:1181}); Spacefill 0; select BONDS ({0:2 4:6}); color bonds opaque [xffff30]; select BONDS ({0:953}); wireframe 0; hover "%U"; frank on; font frank 16 SansSerif Plain; select *; set fontScaling false; } function _setPerspectiveState() { if (reloadfile) { set perspectiveModel 11; } set scaleAngstromsPerInch 0; set perspectiveDepth true; set visualRange 5; set cameraDepth 3; boundbox corners {-23.436 -1.9529999999999994 -19.370000000000005} {27.252000000000002 25.048 33.2} # volume = 71948.70498816001; if (reloadfile) { center {-10.327169047619048 10.503147619047612 4.875438095238091}; } # removed moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {1.9079999999999995 11.5475 6.915000000000001} 36.31468539868592 {0 0 0} 0 0 0 3.0 0.0 0.0; # removed save orientation "default"; slab 100;depth 0; set slabRange 0.0; set spinX = 0; set spinY = 5; set spinZ = 0; spinFps = 20; spin axisangle {0.0 1.0 0.0} 10.0; } function _setSelectionState() { select ({42 48 75 153 225 317}); set hideNotSelected false; } function _setState() { # # initialize; # update caption ppdiaCaptionCmd = "changeCaption('Spacefilling view of single insulin molecule (main chain carbon atoms in white, side chains colored by element, charge or hydrophobic/hydrophilic). PDB ID 4ins.','white','black');"; javascript @ppdiaCaptionCmd; select all; labels off; measurements off; set refreshing false; _setWindowState; _setFileState; _setParameterState; _setModelState; _setPerspectiveState; _setSelectionState; set refreshing false; SelectionHalos OFF; delay 1.0; moveto 1.0 { 631 -644 432 99.96} 201.14 0.0 0.0 {-10.327169047619048 10.503147619047612 4.875438095238091} 46.78145366122263 {0 0 0} 0 0 0 3.0 0.0 0.0;; set refreshing true; if (antialiasDisplayFlag) { antialiasDisplay = true } else { antialiasDisplay = false }; set antialiasTranslucent true; set antialiasImages true; spin on; } _setState;