exit; # Jmol state version 11.8.9 2009-10-28 17:43; # fullName = "jmolAppletSAT__4133606114566575__"; # documentBase = "http://proteopedia.org/wiki/index.php?title=Green_Fluorescent_Protein&action=edit"; # codeBase = "http://proteopedia.org/wiki/extensions/Jmol/"; function _setWindowState() { # height 300; # width 300; stateVersion = 1108009; backgroundColor = "[x000000]"; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; ambientPercent = 45; diffusePercent = 84; specular = true; specularPercent = 22; specularPower = 40; specularExponent = 6; statusReporting = true; } function _setFileState() { set allowEmbeddedScripts false; set autoBond true; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultLattice {0.0 0.0 0.0}; set defaultLoadScript ""; set defaultVDW Jmol; set forceAutoBond false; set loadFormat "http://www.rcsb.org/pdb/files/%FILE.pdb"; set minBondDistance 0.4; set pdbSequential false; set pdbGetHeader false; set percentVdwAtom 20; set smartAromatic true; reloadfile = false; if (loadedfileprev != "a144edeb1a0e1f7ef8ec555f19d99243"); load /*file*/"/cgi-bin/getfrozenstructure?a144edeb1a0e1f7ef8ec555f19d99243"; loadedfileprev = "a144edeb1a0e1f7ef8ec555f19d99243"; reloadfile = true; endif; } function _setVariableState() { set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "jmol"; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlattice "{0.0 0.0 0.0}"; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set defaultvdw "Jmol"; set allowembeddedscripts true; set allowkeystrokes false; set allowrotateselected false; set appletproxy ""; set applysymmetrytobonds false; set atompicking true; set atomtypes ""; set autobond true; set autofps false; set autoloadorientation false; set axes window; set axesmode 0; set axesscale 2.0; set bondmodeor false; set bondpicking false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonrockets false; set chaincasesensitive false; set dataseparator "~~~"; set delaymaximumms 0; set dipolescale 1.0; set disablepopupmenu false; set displaycellparameters true; set dotdensity 3; set dotsselectedonly false; set dotsurface true; set dragselected false; set drawhover false; set drawpicking false; set dynamicmeasurements false; set ellipsoidarcs false; set ellipsoidaxes false; set ellipsoidaxisdiameter 0.02; set ellipsoidball true; set ellipsoiddotcount 200; set ellipsoiddots false; set ellipsoidfill false; set fontcaching true; set forceautobond false; set greyscalerendering false; set hbondsangleminimum 90.0; set hbondsbackbone false; set hbondsdistancemaximum 3.25; set hbondssolid false; set helixstep 1; set helppath "http://chemapps.stolaf.edu/jmol/docs/index.htm"; set hermitelevel 0; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set historylevel 0; set hoverdelay 0.5; set imagestate true; set isosurfacepropertysmoothing true; set justifymeasurements false; set loadatomdatatolerance 0.01; set loadformat "http://www.rcsb.org/pdb/files/%FILE.pdb"; set measureallmodels false; set measurementlabels true; set messagestylechime false; set minbonddistance 0.4; set navigatesurface false; set navigationperiodic false; set navigationspeed 5.0; set pdbgetheader false; set pdbsequential false; set percentvdwatom 20; set pickingspinrate 10; set picklabel ""; set pointgroupdistancetolerance 0.2; set pointgrouplineartolerance 8.0; set propertyatomnumbercolumncount 0; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatacolumncount 0; set propertydatafield 0; set quaternionframe "p"; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set selectallmodels true; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showkeystrokes true; set showmeasurements true; set showmultiplebonds true; set shownavigationpointalways false; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone true; set stereodegrees -5.0; set strandcountformeshribbon 7; set strandcountforstrands 5; set testflag1 false; set testflag2 false; set testflag3 false; set testflag4 false; set tracealpha true; set useminimizationthread true; set usenumberlocalization true; set vectorscale 1.0; set vibrationperiod 1.0; set vibrationscale 1.0; set wireframerotation false; set zoomlarge true; set zshade false; #user-defined variables; # --no global user variables defined--; # label defaults; select none; color label none; background label none; set labelOffset 4 4; set labelAlignment left; set labelPointer off; font label 13.0 SansSerif Plain; } function _setModelState() { calculate hbonds; select all; wireframe off; spacefill off; dots off; backbone off; trace off; ribbon off; cartoon off; strands off; rocket off; meshribbon off; isosurface off; halos off; color cpk; hbonds off; select ({1128}); color atoms opaque [xff0000]; select ({0:464 487:573 582:661 670:1116 1129:1187 1196:1683 1692:1865}); Spacefill 0.0; select ({465 471 472 574 662 1117 1188 1684}); Spacefill 0.4625; select ({469 474 478 486 577 665 1120 1128 1191 1687}); Spacefill 0.425; select ({574:581 662:669 1188:1195 1684:1691}); color atoms translucent 128 cpk; select ({1117:1127}); color atoms opaque [xffa500]; select ({580 668 1194 1690}); Spacefill 0.475; select ({0:396 520:573 582:661 670:1116 1129:1187 1196:1683 1692:1865}); color atoms translucent 128 [xf0f8ff]; select ({465:486}); color atoms opaque [x7fff00]; select ({466:468 470 473 475:477 479:485 575 576 578 579 581 663 664 666 667 669 1118 1119 1121:1127 1189 1190 1192 1193 1195 1685 1686 1688 1689 1691}); Spacefill 0.4875; select ({411:464 487:519}); color atoms opaque [xdc143c]; select BONDS ({1:15 17:24 26:29 31:33 35:38 40:42 44:47 49:51 53:56 58:60 698:706 708:710}); wireframe 0.36; select BONDS ({0 16 25 30 34 39 43 48 52 57 61:697 707 711:1814}); wireframe 0.0; select ({1126}); label "Tyr145"; set labelOffset 4 -4; measures delete; select *; set measures angstroms; font measures 15.0 SansSerif Plain; select measures ({null}); select ({0:464 487:573 582:661 670:1116 1129:1187 1196:1683 1692:1770}); Cartoon on; set echo off; boundBox off; unitcell off; hover "%n %r, Chain=%c, Element=%e"; frank on; font frank 16.0 SansSerif Bold; set fontScaling false; } function _setPerspectiveState() { if (reloadfile); set perspectiveModel 11; endif; set scaleAngstromsPerInch 0.0; set perspectiveDepth true; set visualRange 5.0; set cameraDepth 3.0; boundbox corners {6.0079994 5.7789993 12.23} {45.09 55.552 62.725002} # volume = 98224.31; if (reloadfile); center {27.244091 27.927364 38.460407}; endif; slab 100;depth 0; set spinX = 0; set spinY = 5; set spinZ = 0;spinFps = 30; } function _setSelectionState() { select ({465:486}); set hideNotSelected false; } function _setState() { select all; labels off; measurements off; set refreshing false; _setWindowState; _setFileState; _setVariableState; _setModelState; _setPerspectiveState; _setSelectionState; set refreshing true; #update color key ppdiaSuffix = getProperty("appletInfo","htmlName"); ppdiaSuffix = ppdiaSuffix[1][ppdiaSuffix.find('__')-1].replace('jmolApplet',''); ppdiaColorKey = ""; ppdiaJvsptCmd = "changeColorKeyDiv('" + ppdiaColorKey + "','" + ppdiaSuffix + "');"; javascript @ppdiaJvsptCmd; delay 1.0; moveto 1.0 { 964 98 -247 48.29} 266.0 0.0 0.0 {27.244091 27.927364 38.460407} 30.688896 {0.0 0.0 0.0} -91.64615 -38.155094 0.0;; if (antialiasDisplayFlag); antialiasDisplay = true; else; antialiasDisplay = false; endif; set antialiasTranslucent true; set antialiasImages true; spin on; } _setState;