exit; # Jmol state version 12.2.19_dev 2011-12-13 14:20; # fullName = "jmolAppletSAT__359635403379798__"; # documentBase = "http://proteopedia.org/wiki/index.php?title=Green_Fluorescent_Protein&action=submit"; # codeBase = "http://proteopedia.org/wiki/extensions/Jmol/"; function _setWindowState() { # width 250; # height 250; stateVersion = 1202019; background [x000000]; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; set ambientPercent 45; set diffusePercent 84; set specular true; set specularPercent 22; set specularPower 40; set specularExponent 6; set zShadePower 3; statusReporting = true; } function _setFileState() { set allowEmbeddedScripts false; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set autoBond true; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultLattice {0.0 0.0 0.0}; set defaultLoadFilter ""; set defaultLoadScript ""; set defaultStructureDssp true; set defaultVDW Jmol; set forceAutoBond false; #set defaultDirectory ""; #set loadFormat "http://www.rcsb.org/pdb/files/%FILE.pdb"; #set loadLigandFormat "http://www.rcsb.org/pdb/files/ligand/%FILE.cif"; #set smilesUrlFormat "http://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=True"; #set nihResolverFormat "http://cactus.nci.nih.gov/chemical/structure/%FILE"; #set edsUrlFormat "http://eds.bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE.omap"; #set edsUrlCutoff "load('http://eds.bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE.sfdat').lines.find('MAP_SIGMA').split(' ')[2]"; set legacyAutoBonding true; set minBondDistance 0.4; set minimizationCriterion 0.0010; set minimizationSteps 100; set pdbAddHydrogens false; set pdbGetHeader false; set pdbSequential false; set percentVdwAtom 20; set smallMoleculeMaxAtoms 40000; set smartAromatic true; reloadfile = false; if (loadedfileprev != "a144edeb1a0e1f7ef8ec555f19d99243"); load /*file*/"/cgi-bin/getfrozenstructure?a144edeb1a0e1f7ef8ec555f19d99243"; loadedfileprev = "a144edeb1a0e1f7ef8ec555f19d99243"; reloadfile = true; endif; } function _setVariableState() { set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "jmol"; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlabelpdb "%m%r"; set defaultlabelxyz "%a"; set defaultlattice "{0.0 0.0 0.0}"; set defaultloadfilter ""; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set defaultvdw "Jmol"; set allowembeddedscripts true; set allowmoveatoms false; set allowrotateselected false; set appletproxy ""; set applysymmetrytobonds false; set atompicking true; set atomtypes ""; set autobond true; set autofps false; set axes window; set axesmode 0; set axesscale 2.0; set bondmodeor false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonbaseedges false; set cartoonrockets false; set chaincasesensitive false; set dataseparator "~~~"; set defaultstructuredssp true; set delaymaximumms 0; set dipolescale 1.0; set disablepopupmenu false; set displaycellparameters true; set dotdensity 3; set dotscale 1; set dotsselectedonly false; set dotsurface true; set dragselected false; set drawhover false; set drawpicking false; set dsspcalculatehydrogenalways true; set dynamicmeasurements false; set ellipsoidarcs false; set ellipsoidaxes false; set ellipsoidaxisdiameter 0.02; set ellipsoidball true; set ellipsoiddotcount 200; set ellipsoiddots false; set ellipsoidfill false; set forceautobond false; set fractionalrelative false; set gestureswipefactor 1.0; set greyscalerendering false; set hbondsangleminimum 90.0; set hbondsbackbone false; set hbondsdistancemaximum 3.25; set hbondsrasmol true; set hbondssolid false; set helixstep 1; set helppath "http://chemapps.stolaf.edu/jmol/docs/index.htm"; set hermitelevel 0; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set historylevel 0; set hoverdelay 0.5; set imagestate true; set iskiosk false; set isosurfacekey false; set isosurfacepropertysmoothing true; set isosurfacepropertysmoothingpower 7; set justifymeasurements false; set loadatomdatatolerance 0.01; set measureallmodels false; set measurementlabels true; set messagestylechime false; set minbonddistance 0.4; set minimizationcriterion 0.0010; set minimizationrefresh true; set minimizationsilent false; set minimizationsteps 100; set minpixelselradius 6; set monitorenergy false; set multiplebondradiusfactor 0.0; set multiplebondspacing -1.0; set navigatesurface false; set navigationperiodic false; set navigationspeed 5.0; set partialdots false; set pdbaddhydrogens false; set pdbgetheader false; set pdbsequential false; set percentvdwatom 20; set pickingspinrate 10; set picklabel ""; set pointgroupdistancetolerance 0.2; set pointgrouplineartolerance 8.0; set propertyatomnumbercolumncount 0; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatacolumncount 0; set propertydatafield 0; set quaternionframe "p"; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set saveproteinstructurestate true; set selectallmodels true; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showkeystrokes true; set showmeasurements true; set showmultiplebonds true; set shownavigationpointalways false; set slabbyatom false; set slabbymolecule false; set smallmoleculemaxatoms 40000; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone true; set stereodegrees -5.0; set strandcountformeshribbon 7; set strandcountforstrands 5; set strutdefaultradius 0.3; set strutlengthmaximum 7.0; set strutsmultiple false; set strutspacing 6; set testflag1 false; set testflag2 false; set testflag3 false; set testflag4 false; set tracealpha true; set usearcball false; set useminimizationthread true; set usenumberlocalization true; set vectorscale 1.0; set vibrationscale 1.0; set waitformoveto true; set wireframerotation false; set zdepth 0; set zoomlarge true; set zslab 50; # label defaults; select none; color label none; background label none; set labelOffset 4 4; set labelAlignment left; set labelPointer off; font label 13.0 SansSerif Plain; } function _setModelState() { calculate hbonds; select all; wireframe off; spacefill off; dots off; backbone off; trace off; ribbon off; cartoon off; strands off; rocket off; meshribbon off; isosurface off; halos off; color cpk; hbonds off; select ({0:464 487:1865}); color atoms opaque structure; select ({465 471 472}); Spacefill 0.4625; select ({469 474 478 486}); Spacefill 0.425; select ({466:468 470 473 475:477 479:485}); Spacefill 0.4875; select ({0:464 487:1865}); Spacefill 0.0; select ({465:486}); color atoms opaque [x7fff00]; select BONDS ({1:15 17:24}); wireframe 0.36; select BONDS ({0 16 25:1814}); wireframe 0.0; measures delete; select *; set measures angstroms; font measures 15.0 SansSerif Plain; select ({42:464 487:1770}); Cartoon on; set echo off; boundBox off; font boundBox 14.0 SansSerif Plain; boundBox off; unitcell off; font unitcell 14.0 SansSerif Plain; unitcell off; hover "%n %r, Chain=%c, Element=%e"; frank on; font frank 16.0 SansSerif Bold; select *; frame 1.1; set unitcell {0.0 0.0 0.0}; unitcell OFF; set fontScaling false; } function _setPerspectiveState() { if (reloadfile); set perspectiveModel 11; endif; set scaleAngstromsPerInch 0.0; set perspectiveDepth true; set visualRange 5.0; set cameraDepth 3.0; boundbox corners {6.0079994 5.7789993 12.23} {45.09 55.552 62.725002} # volume = 98224.31; if (reloadfile); center {25.382067 28.761217 38.820362}; endif; # removed moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {25.549 30.665499 37.4775} 31.160713 {0.0 0.0 0.0} 0.0 0.0 0.0; # removed save orientation "default"; slab 100;depth 0; set slabRange 0.0; set spinX = 0; set spinY = 5; set spinZ = 0;spinFps = 30; spin axisangle {0.0 1.0 0.0} 10.0; } function _setSelectionState() { select ({0:464 487:1865}); set hideNotSelected false; } function _setState() { select all; labels off; measurements off; set refreshing false; _setWindowState; _setFileState; _setVariableState; _setModelState; _setPerspectiveState; _setSelectionState; set refreshing true; #update color key ppdiaSuffix = getProperty("appletInfo","htmlName"); ppdiaSuffix = ppdiaSuffix[1][ppdiaSuffix.find('__')-1].replace('jmolApplet',''); ppdiaColorKey = ""; ppdiaJvsptCmd = "changeColorKeyDiv('" + ppdiaColorKey + "','" + ppdiaSuffix + "');"; javascript @ppdiaJvsptCmd; delay 1.0; moveto 1.0 { 291 -918 269 120.63} 115.0 0.0 0.0 {25.382067 28.761217 38.820362} 29.803099 {0.0 0.0 0.0} 101.16526 -12.407794 0.0;; if (antialiasDisplayFlag); antialiasDisplay = true; else; antialiasDisplay = false; endif; set antialiasTranslucent true; set antialiasImages true; spin on; } _setState;