User:Alice Harmon/Notes

From Proteopedia

Jump to: navigation, search

Contents

Ref tag examples

<ref name = "Mustilli2002">PMID:12468729</ref> <ref name = "Fujii2007"/> <ref>PMID:12805596</ref>

Multiple frames on a page

To direct a green link to a specific frame do this:
1. name the frame. instead of <applet load='3ku2' , write |<applet name='left' load='3ku2'
2. add the frame name to the green link. Instead of <scene name='56/562377/Holo-ikinase/1'>, write <scene name='56/562377/Holo-ikinase/1' target='left'>


Pages needed

edit calmodulin pages
edit Ca2+/Calmodulin dependent protein kinase page
Create CaM-binding motifs
also http://en.wikipedia.org/wiki/Calmodulin
see Proteopedia:Policy

ABI1 and ABI2 were discovered in genetic screens for mutants that were ABA insensitive. HAB1, HAB2, were discovered ... and PP2CA/AHG3. They are members of clade A of the plant protein phosphatase 2C family, and each has a C-terminal protein phosphatase 2C domain, and an N-terminal variable sequence[1].

PP2c catalytic domains have 11 conserved subdomains [2].

Truncations of the noncatalytic N-terminal part of Arabidopsis PP2Cs ABI1 had only minor effects on phosphatase activity.Bertauche, N. et al. (1996) Protein phosphatase activity of abscisic acid insensitive 1 (ABI1) protein from Arabidopsis thaliana. Eur. J. Biochem. 241, 193–200


add link to kinase domain page on

PKA pages
Goodsells PKA article on PDB website


Editing issues

HTML tags don't work inside scene tags: superscript works fine here: Ca2+-bound CAD
but not here:

3hx4 - active TgCDPK1

In the green tag, the tag Ca<sup>2+</sup> and the text before it are not rendered.

headings that are in scrollable sections are not included in the the page index

Can load scene using a different structure into a frame, but can't change the caption of the frame.

ABA signaling

Clearest picture of Pyr1 gate - latch is in Annu Reviews article unused:

PP2C

Sheen PMID:9448270 Greengard PMID:16509582 http://en.wikipedia.org/wiki/Phosphatase

Proteopedia Page Contributors and Editors (what is this?)

Alice Harmon, Jaime Prilusky

Personal tools