4cmr

The crystal structure of novel exo-type maltose-forming amylase(Py04_0872) from Pyrococcus sp. ST04

spinqualitylabelsall models 4cmr, resolution 1.80Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 4cmr is a 2 chain structure with sequence from Pyrococcus sp. ST04. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 1.8Å Ligands: MSE Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function I3RE04_9EURY Publication Abstract from PubMed A novel maltose-forming alpha-amylase (PSMA) was recently found in the hyperthermophilic archaeon Pyrococcus sp. ST04. This enzyme shows <13% amino-acid sequence identity to other known alpha-amylases and displays a unique enzymatic property in that it hydrolyzes both alpha-1,4-glucosidic and alpha-1,6-glucosidic linkages of substrates, recognizing only maltose units, in an exo-type manner. Here, the crystal structure of PSMA at a resolution of 1.8 A is reported, showing a tight ring-shaped tetramer with monomers composed of two domains: an N-domain (amino acids 1-341) with a typical GH57 family (beta/alpha)7-barrel fold and a C-domain (amino acids 342-597) composed of alpha-helical bundles. A small closed cavity observed in proximity to the catalytic residues Glu153 and Asp253 at the domain interface has the appropriate volume and geometry to bind a maltose unit, accounting for the selective exo-type maltose hydrolysis of the enzyme. A narrow gate at the putative subsite +1 formed by residue Phe218 and Phe452 is essential for specific cleavage of glucosidic bonds. The closed cavity at the active site is connected to a short substrate-binding channel that extends to the central hole of the tetramer, exhibiting a geometry that is significantly different from classical maltogenic amylases or beta-amylases. The structural features of this novel exo-type maltose-forming alpha-amylase provide a molecular basis for its unique enzymatic characteristics and for its potential use in industrial applications and protein engineering. Structural features underlying the selective cleavage of a novel exo-type maltose-forming amylase from Pyrococcus sp. ST04.,Park KH, Jung JH, Park SG, Lee ME, Holden JF, Park CS, Woo EJ Acta Crystallogr D Biol Crystallogr. 2014 Jun;70(Pt 6):1659-68. doi:, 10.1107/S1399004714006567. Epub 2014 May 30. PMID:24914977 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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