5yrt | pdb_00005yrt

Diol dehydratase, AdoCbl/substrate-free, anaerobically-prepared crystal

spinqualitylabelsall models 5yrt, resolution 1.70Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 5yrt is a 12 chain structure with sequence from Klebsiella oxytoca. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 1.7Å Ligands: 5AD, CA, CL, K Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function Q59470_KLEOX Publication Abstract from PubMed The crystal structures of the B12 -dependent isomerases (eliminating) diol dehydratase and ethanolamine ammonia-lyase complexed with adenosylcobalamin were solved with and without substrates. The structures revealed that the peripheral a-acetamide side chain of the corrin ring directly interacts with the adenosyl group to maintain the group in the catalytic position, and that this side chain swings between the original and catalytic positions in a synchronized manner with the radical shuttling between the coenzyme and substrate/product. Mutations involving key residues that cooperatively participate in the positioning of the adenosyl group, directly or indirectly through the interaction with the a-side chain, decreased the turnover rate and increased the relative rate of irreversible inactivation caused by undesirable side reactions. These findings guide the engineering of enzymes for improved catalysis and producing useful chemicals by utilizing the high reactivity of radical species. Direct Participation of a Peripheral Side Chain of a Corrin Ring in Coenzyme B12 Catalysis.,Shibata N, Sueyoshi Y, Higuchi Y, Toraya T Angew Chem Int Ed Engl. 2018 Jun 25;57(26):7830-7835. doi:, 10.1002/anie.201803591. Epub 2018 May 25. PMID:29797764 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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