6h9z | pdb_00006h9z

Molecular bases of histo-blood group antigen recognition by the most common human rotavirus

spinqualitylabelsall models 6h9z, resolution 1.51Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 6h9z is a 2 chain structure with sequence from Group a rotaviruses. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: DTT, SO4 Gene: VP4 (Group A rotaviruses) Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Publication Abstract from PubMed Rotavirus is the leading agent causing acute gastroenteritis in young children, with the P[8] genotype accounting for more than 80% of infections in humans. The molecular bases for binding of the VP8* domain from P[8] VP4 spike protein to its cellular receptor, the secretory H type-1 antigen (Fuc-alpha1,2-Gal-beta1,3-GlcNAc; H1), and to its precursor lacto-N-biose (Gal-beta1,3-GlcNAc; LNB) have been determined. The resolution of P[8] VP8* crystal structures in complex with H1 antigen and LNB and site-directed mutagenesis experiments revealed that both glycans bind to the P[8] VP8* protein through a binding pocket shared with other members of the P[II] genogroup (i.e.: P[4], P[6] and P[19]). Our results show that the L-fucose moiety from H1 only displays indirect contacts with P[8] VP8*. However, the induced conformational changes in the LNB moiety increase the ligand affinity by two-fold, as measured by surface plasmon resonance (SPR), providing a molecular explanation for the different susceptibility to rotavirus infection between secretor and non-secretor individuals. The unexpected interaction of P[8] VP8* with LNB, a building block of type-1 human milk oligosaccharides, resulted in inhibition of rotavirus infection, highlighting the role and possible application of this disaccharide as an antiviral. While key amino acids in the H1/LNB binding pocket were highly conserved in members of the P[II] genogroup, differences were found in ligand affinities among distinct P[8] genetic lineages. The variation in affinities were explained by subtle structural differences induced by amino acid changes in the vicinity of the binding pocket, providing a fine-tuning mechanism for glycan binding in P[8] rotavirus. Unraveling the role of the secretor antigen in human rotavirus attachment to histo-blood group antigens.,Gozalbo-Rovira R, Ciges-Tomas JR, Vila-Vicent S, Buesa J, Santiso-Bellon C, Monedero V, Yebra MJ, Marina A, Rodriguez-Diaz J PLoS Pathog. 2019 Jun 21;15(6):e1007865. doi: 10.1371/journal.ppat.1007865. PMID:31226167 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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