7ct9

Crystal structure of SAH bound CmoB from Vibrio Vulnificus

spinqualitylabelsall models 7ct9, resolution 2.30Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 7ct9 is a 2 chain structure with sequence from Vibrio vulnificus MO6-24/O. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 2.3Å Ligands: MLI, PO4, SAH Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function CMOB_VIBVU Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L-methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5-carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.[HAMAP-Rule:MF_01590] Publication Abstract from PubMed CmoB utilizes carboxy-S-adenosyl-l-methionine (CxSAM) to carry out unusual carboxymethyl transfer to form 5-carboxymethoxyuridine (cmo(5)U) of several tRNA species in Gram-negative bacteria. In this report, we present three X-ray crystal structures of CmoB from Vibrio vulnificus representing different states in the course of the reaction pathway; i.e., apo-, substrate-bound, and product-bound forms. Especially, the crystal structure of apo-CmoB unveils a novel open state of the enzyme, capturing unprecedented conformational dynamics around the substrate-binding site. The apo-structure demonstrates that the open conformation favors the release of CxSAM thus representing an inactive form. Our crystal structures of CmoB complexed with CxSAM and S-adenosyl-l-homocysteine (SAH) and combined binding assay results support the proposed mechanism underlying the cofactor selectivity, where CmoB preferentially senses negative charge around amino acid residues Lys-91, Tyr-200, and Arg-315. Structural snapshots of CmoB in various states during wobble uridine modification of tRNA.,Jeong S, Kim J Biochem Biophys Res Commun. 2021 Jan 1;534:604-609. doi:, 10.1016/j.bbrc.2020.11.033. Epub 2020 Nov 17. PMID:33213836 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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