8ipf

Crystal structure of an ankyrin protein that can specifically recognize a parallel G-quadruplex

spinqualitylabelsall models 8ipf, resolution 2.01Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 8ipf is a 8 chain structure with sequence from Synthetic construct. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 2.01Å Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Publication Abstract from PubMed G-Quadruplex (G4) structures formed by guanine-rich DNA and RNA sequences are implicated in various biological processes. Understanding the mechanisms by which proteins recognize G4 structures is crucial for elucidating their functional roles. Here we present the X-ray crystal structure of an ankyrin protein bound to a parallel G4 structure. Our findings reveal a new specific recognition mode in which a bundle of alpha-helices and loops of the ankyrin form a flat surface to stack on the G-tetrad core. The protein employs a combination of hydrogen bonds and hydrophobic contacts to interact with the G4, and electrostatic interaction is used to enhance the binding affinity. This binding mechanism provides valuable insights into understanding G4 recognition by proteins. Structural Basis for Parallel G-Quadruplex Recognition by an Ankyrin Protein.,Ngo KH, Liew CW, Heddi B, Phan AT J Am Chem Soc. 2024 May 22;146(20):13709-13713. doi: 10.1021/jacs.4c01971. Epub , 2024 May 13. PMID:38738955 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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