Retinoblastoma-binding protein 3D structures

3D structures of retinoblastoma-binding protein

Updated on 11-October-2023

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• Retinoblastoma-binding protein 1
  • 2yrv, 2lcc – hRBBP1 AT-rich interactive domain – human – NMR
    
  • 2mam - hRBBP1 double tudor domain - NMR
    
• Retinoblastoma-binding protein 2 or lysine-specific demethylase 5A or KDM5A; Domains – ARID 85-175; PHD 1609-1659; JMJ 1-87+348-588
  • 2jxj – hRBBP2 ARID domain + histone H3 – NMR
    
  • 2kgg – hRBBP2 C terminal PHD zinc finger – NMR
    
  • 2kgi - hRBBP2 C terminal PHD zinc finger + histone H3 – NMR
    
  • 3gl6 - hRBBP2 C terminal PHD zinc finger + histone H3 N terminal
    
  • 6bgu, 6bgv 6bgw, 6bgx, 6bgy, 6bgz 6bh0, 6bh1, 6bh2, 6bh3 6bh4, 6bh5, 6dq4, 6dq5, 6dq6, 6dq7, 6dq8, 6dq9, 6dqa, 6dqb, 6dqc, 6dqd, 6dqe, 6dqf, 6ein, 6eiu, 6eiy, 6ej0, 6ej1 – hRBBP2 JMJ domain + inhibitor
    
• RBBP2 homolog or lysine-specific demethylase 5B or KDM5B See Lysine-specific histone demethylase 3D structures
• Retinoblastoma-binding protein 4 or histone-binding protein RBBP4
  • 3gfc – hRBBP4
    
  • 2xu7 – hRBBP4 + zinc finger protein ZFPM1 RBBP4-binding domain
    
  • 4pby, 4pbz, 4pc0, 6zrc, 6zrd – hRBBP4 + metastasis-associated protein
    
  • 4r7a – hRBBP4 + PHD protein 6 peptide
    
  • 6bw4 – hRBBP4 + Prdm16 peptide
    
  • 6bw3 – hRBBP4 + Mds1 peptide
    
  • 5y1u – hRBBP4 + Aebp2 peptide
    
  • 6bw4 – hRBBP4 + Znf16 peptide
    
  • 5xxq – hRBBP4 + Znf827 peptide
    
  • 5wak – hRBBP4 + Suz12 peptide
    
  • 5vtb – hRBBP4 + Bcl11A peptide
    
  • 5xwr – hRBBP4 + peptide
    
  • 7m40 – hRBBP4 + inhibitor
    
  • 7y5k, 7y5l, 7y5o – hRBBP4 + CAF-1
    
  • 7y5u, 7y5v, 8iqf, 8iqg – hRBBP4 + CAF-1 + H3.1 + H4 – Cryo EM
    
  • 5fxy, 6g16 – hRBBP4 + MTA1 protein
    
  • 5wai – hRBBP4 + Suz12 + Jumonji + Aebp2
    
  • 6nq3 – hRBBP4 + Suz12 + Jumonji + PHF19
    
  • 7aoa – hRBBP4 + MTA1 protein + MBD2 + HDAC1 – Cryo EM
    
  • 7ksr, 7ktp – hRBBP4 + Suz12 + Ezh2 + Eed – Cryo EM
    
  • 6c23, 6c24, 7kso – hRBBP4 + Suz12 + Jumonji + Ezh2 + Eed + Jarid2 + Aebp2 – Cryo EM
    
  • 6wkr – hRBBP4 + Suz12 + Jumonji + Ezh2 + Eed + Jarid2 + Aebp2 + ubiquitin + nucleosome – Cryo EM
    
  • 7n40 – hRBBP4 in MuvB complex
    
  • 7r1d – hRBBP4 in MuvB complex – Cryo EM
    
  • 8fyh – hRBBP4 in polycomb complex – Cryo EM
    
• Retinoblastoma-binding protein 5
  • 6km7 – hRBBP5
    
  • 6pwv, 6pwx, 7mbm, 7mbn, 7ud5, 8du4 – hRBBP5 + nucleosome – Cryo EM
    
  • 6kiu, 6kiv, 6kix, 6kiz – hRBBP5 in MLL1-UBNCP complex – Cryo EM
    
  • 6pww, 6w5i, 6w5m, 6w5n – hRBBP5 in MLL1 complex + WDR5 + nucleosome – Cryo EM
    
  • 6kiw – hRBBP5 in MLL3-UBNCP complex – Cryo EM
    
  • 7bre – hRBBP5 + ASH2L + histone-lysine N-methyltransferase 2B
    
  • 7w6i – hRBBP5 + ASH2L + histone-lysine N-methyltransferase 2B + H3.3
    
• Retinoblastoma-binding protein 6
  • 2c7h – hRBBP6 DWNN domain – NMR
    
  • 2ysa - hRBBP6 zinc finger CCHC domain – NMR
    
  • 2yur, 3ztg - hRBBP6 ring finger domain – NMR
    
• Retinoblastoma-binding protein 7
  • 7m3x – hRBBP7
    
  • 3cfs, 3cfv – hRBBP7 + histone H4 helix
• Retinoblastoma-binding protein 8
  • 4d2h – hRBBP8
    
• Retinoblastoma-binding protein 9
  • 2qs9 – hRBBP9
    
  • 7oex – hRBBP9 + Phe
    

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Michal Harel