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You may include any references to papers as in: the use of JSmol in Proteopedia [1] or to the article describing Jmol [2] to the rescue.
Function of your protein
Transport protein that hydrolyzes aliphatic and aromatic lactones and esters.
Is from Rhodopseudomonas palustris which is relevant because it prefers hydrophobic substances.
Biological relevance and broader implications
It has an X-ray structure and the secondary structure is also called a blade. It produces toroids of between four and twelve repeats which are almost always rearranged sequentially in a single peptide chain. Has three main ligands and those are phosphate ion, calcium ion and sodium ion.
Important amino acids
Amino Acids 300-304 are an important part of the drug binding site [3].
Amino Acids 290-294 are an important part of the drug binding site [4].
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:https://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
- ↑ Hall BW, Bingman CA, Fox BG, Noguera DR, Donohue TJ. A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone. J Biol Chem. 2022 Dec 8:102782. doi: 10.1016/j.jbc.2022.102782. PMID:36502920 doi:https://dx.doi.org/10.1016/j.jbc.2022.102782
- ↑ Hall BW, Bingman CA, Fox BG, Noguera DR, Donohue TJ. A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone. J Biol Chem. 2022 Dec 8:102782. doi: 10.1016/j.jbc.2022.102782. PMID:36502920 doi:https://dx.doi.org/10.1016/j.jbc.2022.102782