Uploads by Angel Herraez
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | Description | Versions |
|---|---|---|---|---|---|
| 18:06, 4 July 2026 | Fj2368 H.cif (file) |  |
30 KB | test for uploads | 1 |
| 18:06, 4 July 2026 | 1FAS.pqr (file) | |
84 KB | test for uploads | 1 |
| 18:05, 4 July 2026 | 1osaH.pdb (file) | |
205 KB | test for uploads | 1 |
| 08:27, 3 July 2026 | AltLoc 1hje.txt (file) |  |
51 KB | test of uploads | 1 |
| 19:45, 23 March 2026 | File icon.gif (file) |  |
921 bytes | 1 | |
| 11:57, 30 December 2025 | Linux Libertine sample.png (file) |  |
3 KB | sample of rendering in Linux Libertine font | 1 |
| 11:18, 9 October 2024 | New-look-buttons-models.png (file) |  |
13 KB | switches for multi-model files | 1 |
| 18:02, 25 September 2024 | New-look-buttons.png (file) |  |
64 KB | Buttons under the JSmol panel. Before and after restyling on Sept. 2024 | 1 |
| 13:30, 23 April 2024 | Contacto ICT con Arg132 varillas mas gruesas.png (file) |  |
518 KB | Reverted to version as of 11:06, 22 April 2024 | 2 |
| 16:41, 22 April 2024 | 3MAS.A 1T0L.A pdb14.png (file) |  |
452 KB | aligned 3MAS_A vs 1T0L_A (CIF converted to PDB in Jmol), isocitrate dehydrogenase - made with Jmol 14 | 1 |
| 15:51, 22 April 2024 | 3MAS.A 1T0L.A pdb.png (file) |  |
452 KB | aligned 3MAS_A vs 1T0L_A (CIF converted to PDB in Jmol), isocitrate dehydrogenase | 1 |
| 15:40, 22 April 2024 | 3MAS.A 1T0L.A 16-2-5.png (file) |  |
680 KB | aligned 3MAS_A vs 1T0L_A , icsocitrate dehydrogenase. Saved from Jmol 16.2.5 | 1 |
| 13:12, 19 April 2024 | Test 4wto 1 PNGJ.png (file) |  |
554 KB | test for loading pre-made scenes as PNGJ files | 1 |
| 17:32, 21 August 2023 | AI-predicted coloring schemes.png (file) |  |
11 KB | Color legends used (as of March 2023) according to reliability scores for predicted structures: pLDDT obtained from AlphaFold or ESMfold, and estimate of error obtained from ROSETTAfold | 1 |
| 08:52, 19 March 2023 | BAKER-ROBETTA job14697 nCoV A.pdb (file) | |
1.52 MB | (example file for testing) Predicted structure from Baker-Robetta server, target: nCoV, job: 14697. Only chain A left here for faster loading (original has 3 similar chains) This file has RMSD error values in the B-factor column. | 1 |
| 07:35, 19 March 2023 | RTF 1MW5 1 pLDDT.pdb (file) | |
237 KB | RossetaFold 1MW5 frist model (example file for testing) | 1 |
| 11:38, 28 July 2022 | MP hivdrug02.spt (file) | |
5 KB | another test | 3 |
| 10:53, 28 July 2022 | MPSupportVersion02.spt (file) | |
12 KB | an update of MPSupportVersion01.spt with fixes needed for JSmol 14.31.8 to work in MolecularPlayground pages | 1 |
| 15:43, 17 July 2021 | Animated Electron cryomicroscopy.gif (file) |  |
1.28 MB | animated gif, 360° rotation of the model in proteopedia.org/w/Electron_cryomicroscopy generated in the Proteopedia server and downloaded Not that the isosurface was omitted from this animation | 1 |
| 17:01, 22 October 2020 | Heme-c.pdb (file) | |
12 KB | heme C, prepared from its SMILES in Wikipedia https://en.wikipedia.org/wiki/Heme_C by removing the four isolated H+ and minimized in Jmol (the core was not planar) | 1 |
| 13:01, 19 October 2020 | Load molecule.png (file) |  |
54 KB | new screenshot of the current SAT, to replace the old one | 2 |
| 20:09, 30 September 2019 | Menthol.mol (file) | |
3 KB | Menthol in MOL format, for testing the JmolExtension | 1 |
| 18:11, 13 January 2019 | IgG1.pdb (file) | |
692 KB | Immunoglobulin G1, IgG1. Model built from 2IG2.pdb and 1FC2.pdb with hinge theoretical. AUTHOR EDUARDO A. PADLAN, MOL IMMUNOL 31:169, 1994 (FIG. 1) Chains H and I (heavy), residues 1-452 each Chains L and M (light), residues 501-716 Chain C (carbohydat | 1 |
| 22:48, 20 October 2018 | Ribosome-2.gif (file) |  |
892 KB | Rotating image of the ribosome, from the page Ribosome | 1 |
| 19:44, 20 October 2018 | GFP-4.gif (file) |  |
1.11 MB | Animated rotation of GFP, adapted from existing one in Main_Page and in Green_Fluorescent_Protein Quality reduced for smaller file | 1 |
| 15:56, 20 October 2018 | C2H2 zinc finger primary structure.svg.png (file) |  |
23 KB | A schematic of C2H2 zinc finger domain primary structure, with the bonds coordinating the Zn ion and a drawing of "hand and finger" background. This is a PNG version of the original SVG format, available at https://commons.wikimedia.org/wiki/File:C2H2_z | 1 |
| 15:37, 18 October 2018 | Rubin-rubredoxin-duke cropped.jpg (file) |  |
40 KB | cropped square version of Image:Rubin-rubredoxin-duke.jpg Sculpture by Byron Rubin, 1973. Photo with permission for Proteopedia only, from molecularsculpture.com to Eric Martz | 1 |
| 14:28, 18 October 2018 | Contact-email.png (file) |  |
2 KB | contact email address new version with transparent background | 4 |
| 12:28, 18 October 2018 | Anim CytC.gif (file) |  |
1.33 MB | animated image from Introduction_to_protein_structure | 1 |
| 12:01, 18 October 2018 | Phi-psi-clashes-1.png (file) |  |
38 KB | screenshot from Tutorial:Ramachandran_principle_and_phi_psi_angles#dihedral by Eric Martz (square size) | 3 |
| 11:42, 18 October 2018 | Phi-psi-2.gif (file) |  |
663 KB | animation from https://proteopedia.org/wiki/index.php/Tutorial:Ramachandran_Plot_Inspection by Angel Herráez | 1 |
| 09:05, 18 October 2018 | Anim Avian Influenza Neuraminidase.gif (file) |  |
1.18 MB | animated image from page Avian_Influenza_Neuraminidase%2C_Tamiflu_and_Relenza | 1 |
| 08:38, 18 October 2018 | Anim HIV protease.gif (file) |  |
665 KB | animated image from page Immunodeficiency virus protease green link "for the incoming water." | 1 |
| 08:27, 18 October 2018 | Anim Samatey2 FigA I.gif (file) |  |
383 KB | Animation from User:Fadel A. Samatey/FlgA I Structural flexibility of the periplasmic protein, FlgA, regulates flagellar P-ring assembly in Salmonella enterica. Hideyuki Matsunami, Young-Ho Yoon, Vladimir Meshcheryakov, Keiichi Namba, and Fadel A. Samate | 1 |
| 08:02, 18 October 2018 | Anim Journal-JBIC-2 Hydrophobic interactions.gif (file) |  |
1.15 MB | animated image from Journal-JBIC-2_Hydrophobic_interactions | 1 |
| 07:41, 18 October 2018 | Animated Ribosome 100.gif (file) |  |
800 KB | rotating ribosome (testing image upload) | 1 |
| 14:20, 17 October 2018 | SN2 animation3d gz.xyz (file) | |
1 KB | SN2-Substitution of Cl- and Methanol by Dr. V. Pietzner File retrieved from https://old.chemieunterricht-interaktiv.de/en/animations/sn2_substitution/animation3d.xyz Original page is at https://old.chemieunterricht-interaktiv.de/en/animations/sn2_substitu | 1 |
| 14:10, 17 October 2018 | SN2 animation3d.xyz (file) | |
4 KB | SN2-Substitution of Cl- and Methanol by Dr. V. Pietzner File retrieved from https://old.chemieunterricht-interaktiv.de/en/animations/sn2_substitution/animation3d.xyz Original page is at https://old.chemieunterricht-interaktiv.de/en/animations/sn2_substitu | 1 |
| 14:08, 17 October 2018 | SN1 animation3d.xyz (file) | |
8 KB | SN1-Substitution of Cl- and tert-Butanol by Dr. V. Pietzner File retrieved from https://old.chemieunterricht-interaktiv.de/en/animations/sn1_substutition/animation3d.xyz Original page is at https://old.chemieunterricht-interaktiv.de/en/animations/sn1_subs | 1 |
| 13:57, 27 June 2018 | Dihedral-angles-anim.gif (file) |  |
438 KB | Animation of dihedral angles with rotations about phi and psi. Made from Eric Martz's original by reducing size and quality. | 1 |
| 09:05, 31 January 2018 | I3DC anim banner.gif (file) |  |
468 KB | animated banner made with rotation over all the journal headers in I3DC | 1 |
| 21:46, 21 January 2018 | Proteopedia10 AH.pdf (file) |  |
58 KB | Angel's slides at the 10th Anniversary meeting. Amherst, MA., 20-22 Jan 2018 | 1 |
| 15:05, 15 July 2016 | Psi-rot uni.spt (file) | |
2 KB | reposition echo | 2 |
| 15:04, 15 July 2016 | Phi-rot uni.spt (file) | |
2 KB | reposition echo | 4 |
| 22:21, 14 July 2016 | Phi-Psi uni.spt (file) | |
840 bytes | script for initial display of phi, psi angles in 1iy4_34-36.pdb | 1 |
| 19:42, 1 December 2014 | 1iy4 34-36.pdb.gz (file) | |
1 KB | A tripeptide for illustrating dihedral angles. Residues Trp34, Glu35, Ser36 of lysozyme, excerpted from 1iy4.pdb date 15-JUL-02 (as of November 2014) NMR structure, single "best conformer". | 1 |
| 19:36, 1 December 2014 | 1iy4 34-36.pdb (file) | |
5 KB | A tripeptide for illustrating dihedral angles. Residues Trp34, Glu35, Ser36 of lysozyme, excerpted from 1iy4.pdb date 15-JUL-02 (as of November 2014) NMR structure, single "best conformer". | 1 |
| 09:52, 19 March 2014 | Biotin Jmol.png (file) |  |
38 KB | This is a JMOL+PNG file made by Jmol It can so be dragged and dropped into a Jmol Application or -likely- into a JSmol object in the Proteopedia page itself (need to test that) | 1 |
| 09:14, 19 March 2014 | 1SWE subdimer.pdb (file) | |
149 KB | streptavidin dimer, excerpt from 1SWE | 1 |
| 09:00, 19 March 2014 | Biotin 3D balls.png (file) |  |
20 KB | Biotin - structural formula in a 3D rendering, ball and stick Copied from https://commons.wikimedia.org/wiki/File:Biotin-3D-balls.png Creative Commons CC0 1.0 Universal Public Domain Dedication. | 1 |
