Uploads by Wayne Decatur
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | Description | Versions |
|---|---|---|---|---|---|
| 18:56, 12 October 2025 | FULL LATTICE 1182897 jarmeu from CSD pngj.png (file) |  |
24 KB | FULL_LATTICE_1182897_jarmeu_from_CSD_pngj [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=jarmeu&DatabaseToSearch=Published CSD entry JARMEU] then dragged that into JSMol at https://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm and then used commands i | 1 |
| 18:31, 12 October 2025 | Basic unit 1182897 jarmeu from CSD pngj.png (file) |  |
25 KB | basic_unit_1182897_jarmeu_from CSD_pngj [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=jarmeu&DatabaseToSearch=Published CSD entry JARMEU] then dragged that into JSMol at https://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm and then used commands in J | 1 |
| 02:16, 11 October 2025 | JARMEU 1x1x3 set spacefill.gif (file) |  |
7.52 MB | made using Proteopedia animation export option mof_dev | 1 |
| 02:13, 11 October 2025 | JARMEU 1x1x3 set better.gif (file) |  |
4.67 MB | made using Proteopedia animation export option | 1 |
| 01:14, 11 October 2025 | JARMEU plane133 PNGJ.png (file) |  |
38 KB | JARMEU plane1x3x3 better positioned to show cavities | 1 |
| 20:39, 10 October 2025 | JARMEU plane133.gif (file) |  |
1.56 MB | made using Proteopedia animation export option | 1 |
| 20:05, 10 October 2025 | Jarmeu rock smaller spacefill.gif (file) |  |
2.4 MB | animation FPS 30; CAPTURE "t.gif" LOOP ROCK Y 30 - with view screen smaller first | 1 |
| 20:03, 10 October 2025 | Jarmeu rock smaller.gif (file) |  |
1.58 MB | animation FPS 30; CAPTURE "t.gif" LOOP ROCK Y 30 - with view screen smaller first | 1 |
| 21:11, 9 October 2025 | Jarmeu rockn.gif (file) |  |
1.9 MB | 30 FPS capture "t.gif" LOOP rock 30 | 1 |
| 21:05, 9 October 2025 | Jarmeu rockm.gif (file) |  |
3 MB | rocking cs entry jarmeu with 50 fps | 1 |
| 04:26, 9 October 2025 | JARMEU 1x3x3 plane.png (file) |  |
50 KB | https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=JARMEU&DatabaseToSearch=Published https://www.ccdc.cam.ac.uk/ https://www.eurekalert.org/news-releases/490216 https://www.eurekalert.org/multimedia/546432 https://www.ccdc.cam.ac.uk/about-us/legal-st | 1 |
| 04:13, 9 October 2025 | JARMEU 1x1x3 set.png (file) |  |
43 KB | https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=JARMEU&DatabaseToSearch=Published https://www.ccdc.cam.ac.uk/ https://www.eurekalert.org/news-releases/490216 https://www.eurekalert.org/multimedia/546432 https://www.ccdc.cam.ac.uk/about-us/legal-st | 1 |
| 04:01, 9 October 2025 | JARMEU cell basis.png (file) |  |
49 KB | https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=JARMEU&DatabaseToSearch=Published https://www.ccdc.cam.ac.uk/ https://www.eurekalert.org/news-releases/490216 https://www.eurekalert.org/multimedia/546432 https://www.ccdc.cam.ac.uk/about-us/legal-st | 1 |
| 18:47, 8 October 2025 | Set of 1991923 cif AKA CSD entry WUTXUH.png (file) |  |
310 KB | 1x1x3 set from Jmol Crystal Symmetry Explorer for CSD entry UTXUH https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=WUTXUH&DatabaseToSearch=Published https://www.ccdc.cam.ac.uk/ https://www.eurekalert.org/news-releases/490216 https://www.eurekalert. | 1 |
| 18:43, 8 October 2025 | Plane of 1991923 cif AKA CSD entry WUTXUH.png (file) |  |
306 KB | Plane of 1991923_cif_AKA_CSD_entry_WUTXUH made using Jmol Crystal Symmetry Explorer https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=WUTXUH&DatabaseToSearch=Published https://www.ccdc.cam.ac.uk/ https://www.eurekalert.org/news-releases/490216 http | 1 |
| 18:16, 8 October 2025 | 1991923 cif AKA CSD entry WUTXUH.png (file) |  |
272 KB | https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=WUTXUH&DatabaseToSearch=Published https://www.ccdc.cam.ac.uk/ https://www.eurekalert.org/news-releases/490216 https://www.eurekalert.org/multimedia/546432 https://www.ccdc.cam.ac.uk/about-us/legal-st | 1 |
| 19:48, 2 September 2019 | 6ah3 labeled solid.png (file) |  |
217 KB | 6ah3 with substrate labeled. Made in PyMol by Wayne Decatur https://github.com/fomightez/pymol-binder | 1 |
| 18:50, 17 December 2018 | Fit and alone.jpg (file) |  |
840 KB | summarizes page it is on | 2 |
| 22:33, 13 December 2018 | Rpr2 snm1 1x0t rpa12FIT.pdb (file) |  |
484 KB | version of Rpr2_snm1_1x0t_rpa12.pdb where compare command was run commands determined via https://nbviewer.jupyter.org/github/fomightez/cl_demo-binder/blob/master/notebooks/GSD/GSD%201_vs_21_vs_2_vs_12.ipynb see Image:Rpr2 snm1 1x0t rpa12.pdb | 1 |
| 21:08, 4 December 2018 | Rpr2 snm1 1x0t rpa12.pdb (file) | |
485 KB | merged pdb files into multi-model using [https://github.com/fomightez/structurework/blob/master/python_scripts/merge_multi_PDBs_into_single_file.py merge_multi_PDBs_into_single_file.py] based on [https://nbviewer.jupyter.org/github/fomightez/cl_demo-binde | 1 |
| 18:05, 12 June 2017 | 5tpy cartoon.png (file) |  |
208 KB | made in Jmol from PDB file for 5tpy | 1 |
| 18:45, 18 August 2016 | 7ahlinmembraneOPM.pdb.gz (file) | |
370 KB | according to https://opm.phar.umich.edu/ "Positions of all proteins were recalculated in June 2010 using a new implicit solvent model of the lipid bilayer, PPM 2.0 (see methods)" but it seems I got this before the new ones up because what I uploaded to Pro | 4 |
| 22:07, 9 January 2016 | Layout for schematic and structure with structure.png (file) |  |
450 KB | 4 | |
| 05:24, 13 December 2014 | 4un3 labeled.png (file) |  |
657 KB | 4un3 labeled | 2 |
| 05:43, 1 March 2014 | 2KAM 6 CONVERTED.pdb (file) | |
4 KB | test | 1 |
| 04:56, 1 February 2014 | Making image with JSmol shown for vs Jmol S.png (file) |  |
211 KB | 5 | |
| 04:23, 1 February 2014 | Making image with Jmol S shown for vs JSmol.png (file) |  |
201 KB | 3 | |
| 05:35, 29 January 2014 | Jmol app permission needed toggled.png (file) |  |
36 KB | 1 | |
| 04:29, 29 January 2014 | Making image pointing at java seletion option toggled on.png (file) |  |
96 KB | 1 | |
| 04:21, 29 January 2014 | Making image pointing at java seletion option.png (file) |  |
117 KB | 2 | |
| 04:15, 29 January 2014 | Image pointing at misc.png (file) |  |
85 KB | 1 | |
| 04:04, 29 January 2014 | Mage pointing at preferences.png (file) |  |
131 KB | 1 | |
| 17:16, 1 November 2013 | Pymolcleaned1eyg.pdb (file) | |
336 KB | trying to get a working version of 1eyg for Ann Taylor's class | 1 |
| 17:10, 1 November 2013 | Pymol1kaw.pdb (file) | |
243 KB | still trying to upload a version of 1kaw that will work in Protopedia scene editor | 1 |
| 17:03, 1 November 2013 | Testupload1rpu.pdb (file) | |
361 KB | testing uploading of pdb files for use in scene editor since [1kaw] and [1eyg] have problems in scene editor | 1 |
| 16:44, 1 November 2013 | Workaround1kaw.pdb (file) | |
295 KB | uploading 1kaw try and work around an issue people are having loading this PDB file into the Scene editor the normal way | 1 |
| 03:49, 10 December 2012 | 3sn6opm.pdb.gz (file) | |
215 KB | replaced with gzipped version. | 1 |
| 03:50, 8 December 2012 | 7tm labeled.png (file) |  |
639 KB | Reverted to version as of 16:13, 28 November 2012 | 8 |
| 14:54, 13 November 2012 | 4dklopm.pdb (file) | |
520 KB | 4dkl from the [https://opm.phar.umich.edu/protein.php?pdbid=4dkl Orientations of Proteins in Membranes database] so it has lipid bi-layer boundary added and according to comments on [https://opm.phar.umich.edu/protein.php?pdbid=4dkl the page] T4 lysozyme | 1 |
| 13:58, 10 October 2012 | 3sn6opm.pdb (file) | |
1.06 MB | 3sn6 downloaded from [https://opm.phar.umich.edu/protein.php?search=3sn6 Orientations of proteins in Membranes database] so it has extracellular side and cytoplasmic side of membranes represented | 1 |
| 14:25, 8 August 2011 | 1xwd polyview3d.png (file) |  |
541 KB | made locally to add fancier rendering than Polyview3D alone gives | 4 |
| 22:37, 15 May 2011 | Kink-turn.png (file) |  |
101 KB | added blank space to the left to move it more right | 4 |
| 14:48, 14 March 2011 | VfischeriCsrA2dimer.pdb (file) | |
79 KB | model v fischeri | 1 |
| 14:30, 14 March 2011 | CsRAPDBsPLUSvfischerimodel.pdb (file) | |
380 KB | 2 | |
| 14:00, 14 March 2011 | CsRAPDBs.pdb (file) | |
302 KB | 1y00 1vpz 2bti ALL ALIGNED AND IN THAT ORDER | 1 |
| 13:41, 14 March 2011 | 1y00model1.pdb (file) | |
213 KB | just first model from 1y00 | 1 |
| 03:08, 2 March 2011 | 2cts plus overall reaction.png (file) |  |
634 KB | 4 | |
| 01:50, 2 March 2011 | CitSynReaction schematic as image.png (file) |  |
90 KB | Citrate synthase reaction scheme made to match 3D structure representation | 1 |
| 03:23, 28 February 2011 | 3ctsBIOLligHYDROGN.pdb.gz (file) | |
128 KB | 3cts biological molecue with hydrogens added to ligands by calculation | 1 |
| 04:20, 27 February 2011 | 6ctsBIOLligHYDROGNREATWATER.pdb.gz (file) | |
143 KB | 6cts with ligand hydrogens added plus reactive water has hydrogens added | 1 |
