View source for 6cih


==Crystal structure of a group II intron lariat in the post-catalytic state==
<StructureSection load='6cih' size='340' side='right'caption='[[6cih]], [[Resolution|resolution]] 3.68&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6cih]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pylaiella_littoralis Pylaiella littoralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CIH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6CIH FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.676&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IRI:IRIDIUM+HEXAMMINE+ION'>IRI</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6cih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cih OCA], [https://pdbe.org/6cih PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6cih RCSB], [https://www.ebi.ac.uk/pdbsum/6cih PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6cih ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The group II intron and the spliceosome share a common active site architecture and are thought to be evolutionarily related. Here we report the 3.7 A crystal structure of a eukaryotic group II intron in the lariat-3' exon form, immediately preceding the second step of splicing, analogous to the spliceosomal P complex. This structure reveals the location of the intact 3' splice site within the catalytic core of the group II intron. The 3'-OH of the 5' exon is positioned in close proximity to the 3' splice site for nucleophilic attack and exon ligation. The active site undergoes conformational rearrangements with the catalytic triplex having different configurations before and after the second step of splicing. We describe a complete model for the second step of group II intron splicing that incorporates a dynamic catalytic triplex being responsible for creating the binding pocket for 3' splice site capture.

Structural basis for the second step of group II intron splicing.,Chan RT, Peters JK, Robart AR, Wiryaman T, Rajashankar KR, Toor N Nat Commun. 2018 Nov 8;9(1):4676. doi: 10.1038/s41467-018-06678-0. PMID:30410046<ref>PMID:30410046</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 6cih" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pylaiella littoralis]]
[[Category: Chan RT]]
[[Category: Peters JK]]
[[Category: Rajashankar KR]]
[[Category: Robart AR]]
[[Category: Toor N]]
[[Category: Wiryaman T]]