4f7i: Difference between revisions

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==Structure of Isopropylmalate dehydrogenase from Thermus thermophilus in complex with IPM, Mn and NADH==
==Structure of Isopropylmalate dehydrogenase from Thermus thermophilus in complex with IPM, Mn and NADH==
<StructureSection load='4f7i' size='340' side='right' caption='[[4f7i]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='4f7i' size='340' side='right'caption='[[4f7i]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4f7i]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F7I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4F7I FirstGlance]. <br>
<table><tr><td colspan='2'>[[4f7i]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F7I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4F7I FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IPM:3-ISOPROPYLMALIC+ACID'>IPM</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MPO:3[N-MORPHOLINO]PROPANE+SULFONIC+ACID'>MPO</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene><br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2y41|2y41]], [[2y40|2y40]], [[2y3z|2y3z]], [[1hex|1hex]], [[2ztw|2ztw]], [[2y42|2y42]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IPM:3-ISOPROPYLMALIC+ACID'>IPM</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MPO:3[N-MORPHOLINO]PROPANE+SULFONIC+ACID'>MPO</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">leuB, TTHA1230 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4f7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f7i OCA], [https://pdbe.org/4f7i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4f7i RCSB], [https://www.ebi.ac.uk/pdbsum/4f7i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4f7i ProSAT]</span></td></tr>
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-isopropylmalate_dehydrogenase 3-isopropylmalate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.85 1.1.1.85] </span></td></tr>
</table>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4f7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f7i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4f7i RCSB], [http://www.ebi.ac.uk/pdbsum/4f7i PDBsum]</span></td></tr>
== Function ==
<table>
[https://www.uniprot.org/uniprot/LEU3_THET8 LEU3_THET8] Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.[HAMAP-Rule:MF_01033]


==See Also==
==See Also==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: 3-isopropylmalate dehydrogenase]]
[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus HB8]]
[[Category: Graczer, E.]]
[[Category: Graczer E]]
[[Category: Pallo, A.]]
[[Category: Pallo A]]
[[Category: Vas, M.]]
[[Category: Vas M]]
[[Category: Weiss, M S.]]
[[Category: Weiss MS]]
[[Category: Zavodszky, P.]]
[[Category: Zavodszky P]]
[[Category: 3-ipm-dh]]
[[Category: Beta-ipm dehydrogenase]]
[[Category: Imdh]]
[[Category: Ipmdh]]
[[Category: Isopropylmalate dehydrogenase]]
[[Category: Oxidoreductase]]

Latest revision as of 15:18, 14 March 2024

Structure of Isopropylmalate dehydrogenase from Thermus thermophilus in complex with IPM, Mn and NADH

4f7i, resolution 2.00Å

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