2w4i: Difference between revisions

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{{Seed}}
[[Image:2w4i.png|left|200px]]


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==Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate and an inhibitor==
The line below this paragraph, containing "STRUCTURE_2w4i", creates the "Structure Box" on the page.
<StructureSection load='2w4i' size='340' side='right'caption='[[2w4i]], [[Resolution|resolution]] 1.87&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2w4i]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W4I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W4I FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.87&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DGL:D-GLUTAMIC+ACID'>DGL</scene>, <scene name='pdbligand=VGA:1-[(3S)-5-PHENYL-3-THIOPHEN-2-YL-3H-1,4-BENZODIAZEPIN-2-YL]AZETIDIN-3-OL'>VGA</scene></td></tr>
{{STRUCTURE_2w4i|  PDB=2w4i  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w4i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w4i OCA], [https://pdbe.org/2w4i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w4i RCSB], [https://www.ebi.ac.uk/pdbsum/2w4i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w4i ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/MURI_HELPJ MURI_HELPJ] Provides the (R)-glutamate required for cell wall biosynthesis (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w4/2w4i_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w4i ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
An SAR study of an HTS screening hit generated a series of pyridodiazepine amines as potent inhibitors of Helicobacter pylori glutamate racemase (MurI) showing highly selective anti-H. pylori activity, marked improved solubility, and reduced plasma protein binding. X-ray co-crystal E-I structures were obtained. These uncompetitive inhibitors bind at the MurI dimer interface.


===CRYSTAL STRUCTURE OF HELICOBACTER PYLORI GLUTAMATE RACEMASE IN COMPLEX WITH D-GLUTAMATE AND AN INHIBITOR===
Potent and selective inhibitors of Helicobacter pylori glutamate racemase (MurI): pyridodiazepine amines.,Geng B, Basarab G, Comita-Prevoir J, Gowravaram M, Hill P, Kiely A, Loch J, MacPherson L, Morningstar M, Mullen G, Osimboni E, Satz A, Eyermann C, Lundqvist T Bioorg Med Chem Lett. 2009 Feb 1;19(3):930-6. Epub 2008 Dec 6. PMID:19097892<ref>PMID:19097892</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 2w4i" style="background-color:#fffaf0;"></div>


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==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_19097892}}, adds the Publication Abstract to the page
*[[Glutamate racemase 3D structures|Glutamate racemase 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 19097892 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_19097892}}
__TOC__
 
</StructureSection>
==About this Structure==
2W4I is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W4I OCA].
 
==Reference==
<ref group="xtra">PMID:19097892</ref><references group="xtra"/>
[[Category: Glutamate racemase]]
[[Category: Helicobacter pylori]]
[[Category: Helicobacter pylori]]
[[Category: Lundqvist, T.]]
[[Category: Large Structures]]
[[Category: Cell shape]]
[[Category: Lundqvist T]]
[[Category: Cell wall biogenesis/degradation]]
[[Category: Glutamate racemase]]
[[Category: Isomerase]]
[[Category: Peptidoglycan biosynthesis]]
[[Category: Peptidoglycan synthesis]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 11:54:50 2010''

Latest revision as of 15:43, 13 December 2023

Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate and an inhibitor

2w4i, resolution 1.87Å

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