3bfk: Difference between revisions

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New page: left|200px<br /><applet load="3bfk" size="350" color="white" frame="true" align="right" spinBox="true" caption="3bfk, resolution 1.800Å" /> '''Crystal structure o...
 
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[[Image:3bfk.jpg|left|200px]]<br /><applet load="3bfk" size="350" color="white" frame="true" align="right" spinBox="true"
caption="3bfk, resolution 1.800&Aring;" />
'''Crystal structure of Plasmodium falciparum Rab11a in complex with GDP'''<br />


==About this Structure==
==Crystal structure of Plasmodium falciparum Rab11a in complex with GDP==
3BFK is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Plasmodium_falciparum_3d7 Plasmodium falciparum 3d7] with <scene name='pdbligand=GDP:'>GDP</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Small_monomeric_GTPase Small monomeric GTPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.2 3.6.5.2] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFK OCA].
<StructureSection load='3bfk' size='340' side='right'caption='[[3bfk]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
[[Category: Plasmodium falciparum 3d7]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[3bfk]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_3D7 Plasmodium falciparum 3D7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BFK FirstGlance]. <br>
[[Category: Small monomeric GTPase]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
[[Category: Arrowsmith, C.H.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
[[Category: Bochkarev, A.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfk OCA], [https://pdbe.org/3bfk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bfk RCSB], [https://www.ebi.ac.uk/pdbsum/3bfk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bfk ProSAT]</span></td></tr>
[[Category: Edwards, A.M.]]
</table>
[[Category: Hassanali, A.]]
== Function ==
[[Category: Hui, R.]]
[https://www.uniprot.org/uniprot/Q76NM4_PLAF7 Q76NM4_PLAF7]  
[[Category: Kozieradzki, I.]]
== Evolutionary Conservation ==
[[Category: Lew, J.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Lin, L.]]
Check<jmol>
[[Category: Pizarro, J.C.]]
  <jmolCheckbox>
[[Category: SGC, Structural.Genomics.Consortium.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bfk_consurf.spt"</scriptWhenChecked>
[[Category: Sukumar, D.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Sundstrom, M.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Weigelt, J.]]
  </jmolCheckbox>
[[Category: Wernimont, A.K.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bfk ConSurf].
[[Category: GDP]]
<div style="clear:both"></div>
[[Category: GOL]]
[[Category: gtp-binding]]
[[Category: gtpase]]
[[Category: hydrolase]]
[[Category: malaria]]
[[Category: nucleotide-binding]]
[[Category: rab]]
[[Category: sgc]]
[[Category: structural genomics consortium]]


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 11:55:17 2008''
==See Also==
*[[Ras-related protein Rab 3D structures|Ras-related protein Rab 3D structures]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Plasmodium falciparum 3D7]]
[[Category: Arrowsmith CH]]
[[Category: Bochkarev A]]
[[Category: Edwards AM]]
[[Category: Hassanali A]]
[[Category: Hui R]]
[[Category: Kozieradzki I]]
[[Category: Lew J]]
[[Category: Lin L]]
[[Category: Pizarro JC]]
[[Category: Sukumar D]]
[[Category: Sundstrom M]]
[[Category: Weigelt J]]
[[Category: Wernimont AK]]

Latest revision as of 12:08, 30 August 2023

Crystal structure of Plasmodium falciparum Rab11a in complex with GDP

3bfk, resolution 1.80Å

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