3iyy: Difference between revisions

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[[Image:3iyy.png|left|200px]]


<!--
==Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of EFG.GDPNP-bound E.coli 70S ribosome(EMD-1363)==
The line below this paragraph, containing "STRUCTURE_3iyy", creates the "Structure Box" on the page.
<SX load='3iyy' size='340' side='right' viewer='molstar' caption='[[3iyy]], [[Resolution|resolution]] 10.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3iyy]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O55:H7_str._CB9615 Escherichia coli O55:H7 str. CB9615]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IYY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IYY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 10.9&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iyy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iyy OCA], [https://pdbe.org/3iyy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iyy RCSB], [https://www.ebi.ac.uk/pdbsum/3iyy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iyy ProSAT]</span></td></tr>
{{STRUCTURE_3iyy|  PDB=3iyy  |  SCENE=  }}
</table>
 
== Evolutionary Conservation ==
===Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of EFG.GDPNP-bound E.coli 70S ribosome(EMD-1363)===
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
<!--
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iy/3iyy_consurf.spt"</scriptWhenChecked>
The line below this paragraph, {{ABSTRACT_PUBMED_20643101}}, adds the Publication Abstract to the page
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
(as it appears on PubMed at http://www.pubmed.gov), where 20643101 is the PubMed ID number.
    <text>to colour the structure by Evolutionary Conservation</text>
-->
  </jmolCheckbox>
{{ABSTRACT_PUBMED_20643101}}
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3iyy ConSurf].
 
<div style="clear:both"></div>
==About this Structure==
[[3iyy]] is a 3 chain structure of [[Ribosomal protein L5]] and [[Ribosomal protein S13]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IYY OCA].  


==See Also==
==See Also==
*[[Ribosomal protein L5]]
*[[Ribosomal protein L31|Ribosomal protein L31]]
*[[Ribosomal protein S13]]
*[[Ribosomal protein L5|Ribosomal protein L5]]
 
*[[Ribosomal protein S13|Ribosomal protein S13]]
==Reference==
__TOC__
<ref group="xtra">PMID:20643101</ref><references group="xtra"/>
</SX>
[[Category: Escherichia coli]]
[[Category: Escherichia coli O55:H7 str. CB9615]]
[[Category: Chakraborty, B.]]
[[Category: Large Structures]]
[[Category: Sengupta, J.]]
[[Category: Chakraborty B]]
[[Category: Shasmal, M.]]
[[Category: Sengupta J]]
[[Category: B1b bridge]]
[[Category: Shasmal M]]
[[Category: Ratchet-like motion]]
[[Category: Ribosomal intersubunit bridge]]
[[Category: Ribosomal protein]]
[[Category: Ribosomal protein l31]]

Latest revision as of 10:08, 21 February 2024

Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of EFG.GDPNP-bound E.coli 70S ribosome(EMD-1363)

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