2cyd: Difference between revisions
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==Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae== | |||
<StructureSection load='2cyd' size='340' side='right'caption='[[2cyd]], [[Resolution|resolution]] 2.80Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2cyd]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_hirae Enterococcus hirae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CYD FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LI:LITHIUM+ION'>LI</scene>, <scene name='pdbligand=UMQ:UNDECYL-MALTOSIDE'>UMQ</scene></td></tr> | |||
== | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyd OCA], [https://pdbe.org/2cyd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cyd RCSB], [https://www.ebi.ac.uk/pdbsum/2cyd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cyd ProSAT], [https://www.topsan.org/Proteins/RSGI/2cyd TOPSAN]</span></td></tr> | ||
[[2cyd]] is a 10 chain structure | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/NTPK_ENTHA NTPK_ENTHA] Involved in ATP-driven sodium extrusion. | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/2cyd_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cyd ConSurf]. | |||
<div style="clear:both"></div> | |||
==See Also== | ==See Also== | ||
*[[ | *[[ATPase 3D structures|ATPase 3D structures]] | ||
__TOC__ | |||
</StructureSection> | |||
[[Category: Enterococcus hirae]] | [[Category: Enterococcus hirae]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: | [[Category: Kakinuma Y]] | ||
[[Category: | [[Category: Murata T]] | ||
[[Category: Shirouzu | [[Category: Shirouzu M]] | ||
[[Category: Walker | [[Category: Walker JE]] | ||
[[Category: Yamato | [[Category: Yamato I]] | ||
[[Category: Yokoyama | [[Category: Yokoyama S]] | ||
Latest revision as of 13:45, 13 March 2024
Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae
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