4kr7: Difference between revisions

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~~'''Unreleased structure'''~~

~~The entry~~ 4kr7 is ~~ON HOLD until Paper Publication~~

==Crystal structure of a 4-thiouridine synthetase - RNA complex with bound ATP==

~~Authors~~: ~~Neumann~~, P., ~~Ficner~~, R., ~~Lakomek~~, K.

== Structural highlights ==

<table><tr><td colspan='2'>[[4kr7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KR7 OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=4KR7 FirstGlance].

~~Description~~: ~~Crystal structure~~ of a 4-thiouridine ~~synthetase~~ -~~RNA complex with bound ATP~~

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.421Å</td></tr>

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=4kr7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kr7 OCA], [https://pdbe.org/4kr7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4kr7 RCSB], [https://www.ebi.ac.uk/pdbsum/4kr7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4kr7 ProSAT]</td></tr>

</table>

== Function ==

[https://www.uniprot.org/uniprot/THII_THEMA THII_THEMA] Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS (By similarity).

__TOC__

</StructureSection>

[[Category: Large Structures]]

[[Category: Thermotoga maritima MSB8]]

[[Category: Ficner R]]

[[Category: Lakomek K]]

[[Category: Neumann P]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 4kr7 is ON HOLD  until Paper Publication
+==Crystal structure of a 4-thiouridine synthetase - RNA complex with bound ATP==
+<StructureSection load='4kr7' size='340' side='right'caption='[[4kr7]], [[Resolution|resolution]] 3.42&Aring;' scene=''>
-Authors: Neumann, P., Ficner, R., Lakomek, K.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4kr7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KR7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KR7 FirstGlance]. <br>
-Description: Crystal structure of a 4-thiouridine synthetase -RNA complex with bound ATP
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.421&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4kr7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kr7 OCA], [https://pdbe.org/4kr7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4kr7 RCSB], [https://www.ebi.ac.uk/pdbsum/4kr7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4kr7 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/THII_THEMA THII_THEMA] Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS (By similarity).
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Thermotoga maritima MSB8]]
+[[Category: Ficner R]]
+[[Category: Lakomek K]]
+[[Category: Neumann P]]