4kr7: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{STRUCTURE_4kr7|  PDB=4kr7  |  SCENE=  }}
===Crystal structure of a 4-thiouridine synthetase - RNA complex with bound ATP===
{{ABSTRACT_PUBMED_24705700}}


==Function==
==Crystal structure of a 4-thiouridine synthetase - RNA complex with bound ATP==
[[http://www.uniprot.org/uniprot/THII_THEMA THII_THEMA]] Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS (By similarity).
<StructureSection load='4kr7' size='340' side='right'caption='[[4kr7]], [[Resolution|resolution]] 3.42&Aring;' scene=''>
 
== Structural highlights ==
==About this Structure==
<table><tr><td colspan='2'>[[4kr7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KR7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KR7 FirstGlance]. <br>
[[4kr7]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KR7 OCA].  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.421&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
==Reference==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4kr7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kr7 OCA], [https://pdbe.org/4kr7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4kr7 RCSB], [https://www.ebi.ac.uk/pdbsum/4kr7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4kr7 ProSAT]</span></td></tr>
<ref group="xtra">PMID:024705700</ref><references group="xtra"/><references/>
</table>
[[Category: TRNA sulfurtransferase]]
== Function ==
[[Category: Ficner, R.]]
[https://www.uniprot.org/uniprot/THII_THEMA THII_THEMA] Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS (By similarity).
[[Category: Lakomek, K.]]
__TOC__
[[Category: Neumann, P.]]
</StructureSection>
[[Category: 4-thiouridine synthesis]]
[[Category: Large Structures]]
[[Category: Adenylation]]
[[Category: Thermotoga maritima MSB8]]
[[Category: Pp-loop motif]]
[[Category: Ficner R]]
[[Category: Sulfurtransferase]]
[[Category: Lakomek K]]
[[Category: Thiouridine]]
[[Category: Neumann P]]
[[Category: Thump domain]]
[[Category: Transferase-rna complex]]
[[Category: Trna modification]]

Latest revision as of 12:14, 1 March 2024

Crystal structure of a 4-thiouridine synthetase - RNA complex with bound ATP

4kr7, resolution 3.42Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA