3ce0: Difference between revisions

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New page: left|200px<br /><applet load="3ce0" size="350" color="white" frame="true" align="right" spinBox="true" caption="3ce0, resolution 2.800Å" /> '''Human poly(ADP-ribo...
 
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[[Image:3ce0.jpg|left|200px]]<br /><applet load="3ce0" size="350" color="white" frame="true" align="right" spinBox="true"
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'''Human poly(ADP-ribose) polymerase 3, catalytic fragment in complex with an inhibitor PJ34'''<br />


==About this Structure==
==Human poly(ADP-ribose) polymerase 3, catalytic fragment in complex with an inhibitor PJ34==
3CE0 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=P34:'>P34</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/NAD(+)_ADP-ribosyltransferase NAD(+) ADP-ribosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.30 2.4.2.30] Known structural/functional Site: <scene name='pdbsite=AC1:P34+Binding+Site+For+Residue+A+601'>AC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE0 OCA].  
<StructureSection load='3ce0' size='340' side='right'caption='[[3ce0]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[3ce0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CE0 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=P34:N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE'>P34</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ce0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce0 OCA], [https://pdbe.org/3ce0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ce0 RCSB], [https://www.ebi.ac.uk/pdbsum/3ce0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ce0 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/PARP3_HUMAN PARP3_HUMAN] Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks. May link the DNA damage surveillance network to the mitotic fidelity checkpoint. Negatively influences the G1/S cell cycle progression without interfering with centrosome duplication. Binds DNA. May be involved in the regulation of PRC2 and PRC3 complex-dependent gene silencing.<ref>PMID:16924674</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ce/3ce0_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ce0 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Poly(ADP-ribose) polymerases (PARPs) activate DNA repair mechanisms upon stress- and cytotoxin-induced DNA damage, and inhibition of PARP activity is a lead in cancer drug therapy. We present a structural and functional analysis of the PARP domain of human PARP-3 in complex with several inhibitors. Of these, KU0058948 is the strongest inhibitor of PARP-3 activity. The presented crystal structures highlight key features for potent inhibitor binding and suggest routes for creating isoenzyme-specific PARP inhibitors.
 
Structural basis for inhibitor specificity in human poly(ADP-ribose) polymerase-3.,Lehtio L, Jemth AS, Collins R, Loseva O, Johansson A, Markova N, Hammarstrom M, Flores A, Holmberg-Schiavone L, Weigelt J, Helleday T, Schuler H, Karlberg T J Med Chem. 2009 May 14;52(9):3108-11. PMID:19354255<ref>PMID:19354255</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 3ce0" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[Poly(ADP-ribose) polymerase 3D structures|Poly(ADP-ribose) polymerase 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: NAD(+) ADP-ribosyltransferase]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Arrowsmith CH]]
[[Category: Arrowsmith, C H.]]
[[Category: Berglund H]]
[[Category: Berg, S van den.]]
[[Category: Bountra C]]
[[Category: Berglund, H]]
[[Category: Busam R]]
[[Category: Bountra, C.]]
[[Category: Collins R]]
[[Category: Busam, R.]]
[[Category: Dahlgren LG]]
[[Category: Collins, R.]]
[[Category: Edwards AM]]
[[Category: Dahlgren, L G.]]
[[Category: Flodin S]]
[[Category: Edwards, A M.]]
[[Category: Flores A]]
[[Category: Flodin, S.]]
[[Category: Graslund S]]
[[Category: Flores, A.]]
[[Category: Hammarstrom M]]
[[Category: Graslund, S.]]
[[Category: Herman MD]]
[[Category: Hammarstrom, M.]]
[[Category: Johansson A]]
[[Category: Herman, M D.]]
[[Category: Johansson I]]
[[Category: Johansson, A.]]
[[Category: Kallas A]]
[[Category: Johansson, I.]]
[[Category: Karlberg T]]
[[Category: Kallas, A.]]
[[Category: Kotenyova T]]
[[Category: Karlberg, T.]]
[[Category: Lehtio L]]
[[Category: Kotenyova, T.]]
[[Category: Moche M]]
[[Category: Lehtio, L.]]
[[Category: Nilsson ME]]
[[Category: Moche, M.]]
[[Category: Nordlund P]]
[[Category: Nilsson, M E.]]
[[Category: Nyman T]]
[[Category: Nordlund, P.]]
[[Category: Persson C]]
[[Category: Nyman, T.]]
[[Category: Sagemark J]]
[[Category: Persson, C.]]
[[Category: Svensson L]]
[[Category: SGC, Structural Genomics Consortium.]]
[[Category: Thorsell AG]]
[[Category: Sagemark, J.]]
[[Category: Tresaugues L]]
[[Category: Svensson, L.]]
[[Category: Weigelt J]]
[[Category: Thorsell, A G.]]
[[Category: Welin M]]
[[Category: Tresaugues, L.]]
[[Category: Van den Berg S]]
[[Category: Weigelt, J.]]
[[Category: Welin, M.]]
[[Category: P34]]
[[Category: alternative splicing]]
[[Category: catalytic fragment]]
[[Category: enzyme-inhibitor complex]]
[[Category: glycosyltransferase]]
[[Category: nad]]
[[Category: nucleus]]
[[Category: sgc]]
[[Category: structural genomic]]
[[Category: structural genomics consortium]]
[[Category: transferase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Mar 14 09:41:19 2008''

Latest revision as of 12:26, 30 August 2023

Human poly(ADP-ribose) polymerase 3, catalytic fragment in complex with an inhibitor PJ34

3ce0, resolution 2.80Å

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