Ephrin: Difference between revisions

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New page: <StructureSection load='3mx0' size='340' side='right' caption='Structure of human ephrin -A5 receptor-binding domain complex with ephrin type A receptor 2 (PDB code 3mx0).' scene=''> ...
 
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<StructureSection load='' size='340' side='right' caption='Structure of glycosylated human ephrin-A5 receptor-binding domain (green) complex with ephrin type A receptor 2 (cyan) (PDB code [[3mx0]]).' scene='59/594659/Cv/5'>
<StructureSection load='3mx0' size='340' side='right' caption='Structure of human ephrin -A5 receptor-binding domain complex with ephrin type A receptor 2 (PDB code [[3mx0]]).' scene=''>


== Function ==
== Function ==


'''Ephrins''' (Eph) are the membrane-bound ligands of ephrin receptors.  The binding of Eph and ephrin receptors is achieved via cell-cell interaction.  Eph/Eph receptor signaling regulates embryonic development, guidance of axon growth, long-term potentiation, angiogenesis and stem-cell differentiation.
'''Ephrins''' (Eph) are the membrane-bound ligands of ephrin receptors.  The binding of Eph and ephrin receptors is achieved via cell-cell interaction.  Eph/Eph receptor signaling regulates embryonic development, guidance of axon growth, long-term potentiation, angiogenesis and stem-cell differentiation <ref>PMID:17420126</ref>. See also [[Ephrin receptor]], [[Eph/ephrin signaling pathway]], [[Ephrin Type-A Receptor]].
*'''Ephrin-A3''' has a role in forming precise tonotropy in the auditory brainstem to ensure accurate sound discrimination<ref>PMID:34235739</ref>.
*'''Ephrin-A5''' is required for the proper guidance and mapping of retinal axons in the mammalian midbrain<ref>PMID:9491985</ref>.
*'''Ephrin-B1''' has a role in palatal shelf outgrowth<ref>PMID:20844017</ref>.
*'''Ephrin-B2''' is a regulator of VEGFR signalling and thus controls angiogenic growth<ref>PMID:20445537</ref>.
*'''Ephrin-B3''' plays a key role at the midline to regulate axonal crossing<ref>PMID:11297511</ref>.


== Disease ==
== Disease ==
Eph-A5 is implicated in spinal cord injury.  Eph-A1 is implicated in myocardial injury and renal reperfusion injury.


== Relevance ==
== Structural highlights ==


== Structural highlights ==
<scene name='59/594659/Cv/4'>Ephrin-A5 receptor-binding domain complex with ephrin type A receptor 2</scene> (PDB code [[3mx0]]).<ref>PMID:20505120</ref>
</StructureSection>


==3D structures of ephrin==
==3D structures of ephrin==


Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|
*Ephrin-A1
**[[3hei]], [[3mbw]], [[3czu]] – hEph receptor-binding domain + Eph type A receptor 2 <br />
**[[3fl7]] – hEph ectodomain  <br />
*Ephrin-A2
**[[2wo3]] – hEph receptor-binding domain + Eph type A receptor 4 <br />


===Ephrin-A5===
* Ephrin-A3


[[1shx]] – mEph receptor-binding domain – mouse<br />
**[[3dzq]] – hEph kinase domain + inhibitor <br />
[[1shw]] – mEph residues 88-225 + Eph type B receptor 2 <br />
[[2x11]], [[3mx0]] – hEph receptor-binding domain + Eph type A receptor 2 - human<br />
[[4bk5]], [[4bka]], [[4m4r]] – hEph receptor-binding domain + Eph type A receptor 4 <br />
[[4l0p]] – hEph receptor-binding domain + Eph type A receptor 3 <br />


===Ephrin-B2===
*Ephrin-A5


[[2i85]] – hEph residues 1-142 – NMR<br />
**[[2x11]], [[3mx0]] – hEph receptor-binding domain + Eph type A receptor 2 - human<br />
[[1iko]] – mEph ectodomain <br />
**[[4bk5]], [[4bka]], [[4m4r]] – hEph receptor-binding domain + Eph type A receptor 4 <br />
[[1kgy]] – mEph receptor-binding domain + Eph type B receptor 2 <br />
**[[4l0p]] – hEph receptor-binding domain + Eph type A receptor 3 <br />
[[2hle]] – mEph receptor-binding domain + Eph type B receptor 4 <br />
**[[1shx]] – mEph receptor-binding domain – mouse<br />
[[2wo2]], [[3gxu]] – hEph receptor-binding domain + Eph type A receptor 4 <br />
**[[1shw]] – mEph residues 88-225 + Eph type B receptor 2 <br />
[[2vsk]], [[2vsm]] – hEph receptor-binding domain + virus hemagglutinin neuraminidase <br />


===Ephrin-B3===
*Ephrin-B1


[[3d12]] – mEph receptor-binding domain + virus hemagglutinin neuraminidase <br />
**[[6thg]] – hEph extracellular domain 27-170 + glycoprotein <br />
[[4bkf]] – hEph receptor-binding domain + Eph type A receptor 4 <br />
**[[6p7s]] – mEph extracellular domain + glycoprotein <br />


===Ephrin-A1===
*Ephrin-B2


[[3hei]], [[3mbw]] – hEph receptor-binding domain + Eph type A receptor 2 <br />
**[[2i85]] – hEph residues 1-142 – NMR<br />
**[[2wo2]], [[3gxu]] – hEph extracellular domain + Eph type A receptor 4 <br />
**[[4uf7]], [[6pdl]] – hEph extracellular domain + glycoprotein <br />
**[[2vsk]], [[2vsm]] – hEph extracellular domain + virus hemagglutinin neuraminidase <br />
**[[1iko]], [[7s7k]] – mEph ectodomain <br />
**[[1kgy]] – mEph extracellular domain + Eph type B receptor 2 <br />
**[[2hle]] – mEph extracellular domain + Eph type B receptor 4 <br />
**[[6p7y]] – mEph extracellular domain + glycoprotein <br />


===Ephrin-A2===
*Ephrin-B3


[[2wo3]] – hEph receptor-binding domain + Eph type A receptor 4 <br />
**[[4bkf]] – hEph receptor-binding domain + Eph type A receptor 4 <br />
**[[3d12]] – mEph receptor-binding domain + virus hemagglutinin neuraminidase <br />


}}





Latest revision as of 09:30, 18 June 2024

Structure of glycosylated human ephrin-A5 receptor-binding domain (green) complex with ephrin type A receptor 2 (cyan) (PDB code 3mx0).

Drag the structure with the mouse to rotate

3D structures of ephrin

Updated on 18-June-2024


References

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman