Semaphorin: Difference between revisions

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{{STRUCTURE_3nvn|  PDB=3nvn | SIZE=400| SCENE= |right|CAPTION=Glycosylated human semaphorin 7A (grey) complex with plexin-C1 (green) and Ca+2 ion (green), [[3nvn]] }}
<StructureSection load='3nvn' size='350' side='right' scene='46/466531/Cv/2' caption='Glycosylated human semaphorin 7A (deeppink) complex with plexin-C1 (cyan) and Ca+2 ion (green), [[3nvn]]'>
== Function ==  
== Function ==  
'''Semaphorin''' (SEMA) are membrane proteins which act as axonal growth guidance molecules.  SEMA act as short-range inhibitory signal<ref>PMID:10934324</ref>. There are 8 classes of SEMA numbered 1 to 7 and V (viral).  Each class has several subgroups which share similar characteristics.
'''Semaphorin''' (SEMA) are membrane proteins which act as axonal growth guidance molecules.  SEMA act as short-range inhibitory signal<ref>PMID:10934324</ref>. SEMA and Plexin are crucial for the development and homeostasis of nervous, immune and cardiovascular systems. There are 8 classes of SEMA numbered 1 to 7 and V (viral).  Each class has several subgroups which share similar characteristics.


*'''Semaphorin 3''' is needed for normal patterning and growth of nerves, bones and heart<ref>PMID:8849723</ref>.<br />
*'''Semaphorin 3''' is needed for normal patterning and growth of nerves, bones and heart<ref>PMID:8849723</ref>.<br />
*'''Semaphorin 4D''' acts through its receptor to tip the balance of bone homeostasis toward resorption <ref>PMID:26910109</ref>.<br />
*'''Semaphorin 4D''' acts through its receptor to tip the balance of bone homeostasis toward resorption <ref>PMID:26910109</ref>.<br />
*'''Semaphorin 6D''' is part of the complex involved in macrophage polarization <ref>PMID:29777213</ref>.<br />
*'''Semaphorin 7A''' promotes axon growth through integrins and MAPKs <ref>PMID:12879062</ref>.<br />
*'''Semaphorin 7A''' promotes axon growth through integrins and MAPKs <ref>PMID:12879062</ref>.<br />


== Relevance ==
== Relevance ==
SEMAs ar implicated in a number of developmental, psychiatric and neurodegenerative disorders<ref>PMID:19541473</ref>.  SEMA 3A is a marker for disease activity of systemic lupus erythematosus<ref>PMID:22875653</ref>.
SEMAs ar implicated in a number of developmental, psychiatric and neurodegenerative disorders<ref>PMID:19541473</ref>.  SEMA 3A is a marker for disease activity of systemic lupus erythematosus<ref>PMID:22875653</ref>.
== Structural insights ==
SEMA interacts with plexin C1 via 3 regions: <scene name='46/466531/Cv/5'>SEMA extrusion helix</scene>, <scene name='46/466531/Cv/6'>loop4c-4d</scene> and <scene name='46/466531/Cv/7'>blade 3</scene><ref>PMID:20727575</ref>. Water molecules are shown as red spheres.


==3D structures of semaphorin==
==3D structures of semaphorin==
{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|
*Semaphorin 3
**[[1q47]], [[4gz8]] – mSEMA 3A – mouse<br />
**[[4gza]] – mSEMA 3A + plexin A2 + neuropilin 1
*Semaphorin 4
**[[1olz]] – hSEMA 4D extracellular domain – human
**[[3ol2]] - hSEMA 4D extracellular domain + plexin-B1
*Semaphorin 6
**[[3afc]], [[3okw]] - mSEMA 6A extracellular domain
**[[3al8]] - mSEMA 6A + plexin-A2


*Semaphorin 7
[[Semaphorin 3D structures]]


**[[3nvn]], [[3nvq]] – hSEMA 7A + plexin-C1
</StructureSection>
}}
== References ==
== References ==
<references/>
<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]