Siderocalin: Difference between revisions

From Proteopedia
Jump to navigationJump to search
No edit summary
Michal Harel (talk | contribs)
No edit summary
 
(13 intermediate revisions by 3 users not shown)
Line 1: Line 1:
<StructureSection load='1x89' size='450' side='right' caption='Human siderocalin complex with the siderophore carboxymycobactin (PDB code [[1x89]])' scene='48/488406/Cv/1' >
<StructureSection load='' size='350' side='right' caption='Human siderocalin complex with the siderophore carboxymycobactin (PDB code [[1x89]])' scene='48/488406/Cv/1' >
__TOC__
== Function ==
== Function ==
'''Siderocalin''' (Scn) binds ferric siderophores in order to intercept delivery of iron to bacteria which require it thus  impeding their virulence<ref>PMID:19053425</ref>.
'''Siderocalin''' (Scn) or '''neutrophil gelatinase-associated lipocalin''' binds ferric siderophores in order to intercept delivery of iron to bacteria which require it thus  impeding their virulence<ref>PMID:19053425</ref>.


== Relevance ==
== Relevance ==
Line 7: Line 8:


== Structural highlights ==
== Structural highlights ==
Scn-NGAL interacts with the siderophore carboxymycobactin where the latter is centered in the protein calyx making multiple interactions including cation-π bonds involving several lysines and arginine<ref>PMID:15642259</ref>.
Scn-NGAL interacts with the <scene name='48/488406/Cv/4'>siderophore carboxymycobactin where the latter is centered in the protein calyx</scene> making <scene name='48/488406/Cv/5'>multiple interactions including cation-π bonds involving several lysines and arginine</scene><ref>PMID:15642259</ref>. Water  molecules are shown as red spheres. <scene name='48/488406/Cv/6'>Fe coordination site</scene>.


</StructureSection>
==3D structures of siderocalin==
==3D structures of siderocalin==
[[Siderocalin 3D structures]]


Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|
*Siderocalin or lipocalin-2
**[[5jr8]], [[3bx8]] – hScn NGAL - human<br />
**[[3s26]] – mScn NGAL - mouse<br />
**[[2kt4]] – qScn Q83 – quail<br />
*Siderocalin complex
**[[4mvi]], [[4mvk]], [[4mvl]] – hScn NGAL (mutant) + beta amyloid protein 40 peptide<br />
**[[3bx7]] – hScn NGAL + CTLA-4<br />
**[[3tzs]] – hScn NGAL (mutant) + phenylurea<br />
**[[4zfx]], [[4zhc]], [[4zhd]], [[4zhf]], [[4zhg]], [[4zhh]], [[4qae]], [[4k19]], [[4aiw]], [[4aix]], [[3u03]], [[3u0d]], [[3k3l]], [[3dsz]], [[1x89]], [[1x8u]], [[1x71]] – hScn NGAL + siderophore<br />
**[[3tf6]], [[3t1d]], [[3i0a]], [[3hwd]] – hScn NGAL (mutant) + siderophore<br />
**[[3pec]], [[3ped]] – hScn NGAL + siderophore + Fe<br />
**[[3hwe]], [[3hwf]], [[3hwg]], [[3cmp]], [[3by0]], [[3cbc]] – hScn NGAL (mutant) + siderophore + Fe<br />
**[[3fw4]], [[3fw5]] – hScn NGAL (mutant) + catechol + Fe<br />
**[[4gh7]] – hScn NGAL + fibronectin<br />
**[[3u9p]] – mScn NGAL  + Fab <br />
**[[2lbv]] – qScn Q83 + enterobactin – NMR<br />
**[[3sao]] – cScn + myristoyl lysophosphatidic acid - chicken<br />
>
}}
==References==
==References==
</StructureSection>
<references />
<references />


[[Category:Topic Page]]
[[Category:Topic Page]]

Latest revision as of 08:20, 21 March 2022

Human siderocalin complex with the siderophore carboxymycobactin (PDB code 1x89)

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman