6lvq: Difference between revisions
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New page: '''Unreleased structure''' The entry 6lvq is ON HOLD Authors: Lai, C.H., Lyu, P.C. Description: Crystal structure of DUSP22_VO4 Category: Unreleased Structures [[Category: Lai, C.H... |
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The | ==Crystal structure of DUSP22_VO4== | ||
<StructureSection load='6lvq' size='340' side='right'caption='[[6lvq]], [[Resolution|resolution]] 1.38Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LVQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LVQ FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.38Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=VO4:VANADATE+ION'>VO4</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6lvq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lvq OCA], [https://pdbe.org/6lvq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6lvq RCSB], [https://www.ebi.ac.uk/pdbsum/6lvq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6lvq ProSAT]</span></td></tr> | |||
</table> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Cysteine-based protein tyrosine phosphatases (Cys-based PTPs) perform dephosphorylation to regulate signaling pathways in cellular responses. The hydrogen bonding network in their active site plays an important conformational role and supports the phosphatase activity. Nearly half of dual-specificity phosphatases (DUSPs) use three conserved residues, including aspartate in the D-loop, serine in the P-loop, and asparagine in the N-loop, to form the hydrogen bonding network, the D-, P-, N-triloop interaction (DPN-triloop interaction). In this study, DUSP22 is used to investigate the importance of the DPN-triloop interaction in active site formation. Alanine mutations and somatic mutations of the conserved residues, D57, S93, and N128 substantially decrease catalytic efficiency (kcat/KM) by more than 10(2)-fold. Structural studies by NMR and crystallography reveal that each residue can perturb the three loops and induce conformational changes, indicating that the hydrogen bonding network aligns the residues in the correct positions for substrate interaction and catalysis. Studying the DPN-triloop interaction reveals the mechanism maintaining phosphatase activity in N-loop-containing PTPs and provides a foundation for further investigation of active site formation in different members of this protein class. | |||
Structural Insights into the Active Site Formation of DUSP22 in N-loop-containing Protein Tyrosine Phosphatases.,Lai CH, Chang CC, Chuang HC, Tan TH, Lyu PC Int J Mol Sci. 2020 Oct 12;21(20). pii: ijms21207515. doi: 10.3390/ijms21207515. PMID:33053837<ref>PMID:33053837</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: Lai | <div class="pdbe-citations 6lvq" style="background-color:#fffaf0;"></div> | ||
[[Category: Lyu | |||
==See Also== | |||
*[[Dual specificity phosphatase 3D structures|Dual specificity phosphatase 3D structures]] | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Lai CH]] | |||
[[Category: Lyu PC]] | |||
