Deaminase 3D structures: Difference between revisions

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Line 18: Line 18:
**[[4f3w]] – CDA – ''Mycobacterium marinum'' <BR />
**[[4f3w]] – CDA – ''Mycobacterium marinum'' <BR />
**[[6kw6]] – CDA – ''Streptomyces noursei''<BR />
**[[6kw6]] – CDA – ''Streptomyces noursei''<BR />
**[[7zob]] – CDA – metagenome<BR />


*''Cytidine deaminase complex with nucleoside''
*''Cytidine deaminase complex with nucleoside''
Line 35: Line 36:
*Cytosine deaminase
*Cytosine deaminase


**[[1rb7]], [[1uaq]] – yCDDA  <BR />
**[[1rb7]], [[1uaq]], [[8vlk]] – yCDDA  <BR />
**[[1ysb]], [[1ysd]]  – yCDDA  (mutant)<BR />
**[[1ysb]], [[1ysd]], [[8i3n]], [[8vll]], [[8vlm]]  – yCDDA  (mutant)<BR />
**[[1k6w]] – EcCDDA  <BR />
**[[1k6w]] – EcCDDA  <BR />
**[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]]  – EcCDDA  (mutant)<BR />
**[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]]  – EcCDDA  (mutant)<BR />
*''Cytosine deaminase complex''
*''Cytosine deaminase complex''


**[[1ox7]] – yCDDA + Zn <BR />
**[[1ox7]], [[8vlj]] – yCDDA + Zn <BR />
**[[8i3o]] – yCDDA  (mutant) + Mn<BR />
**[[1p6o]] – yCDDA  + pyrimidine derivative<BR />
**[[1p6o]] – yCDDA  + pyrimidine derivative<BR />
**[[2o3k]] – yCDDA  (mutant) + pyrimidine derivative<BR />
**[[2o3k]], [[8i3p]] – yCDDA  (mutant) + pyrimidine derivative<BR />
**[[3r0d]] – EcCDDA + Zn <BR />
**[[3r0d]] – EcCDDA + Zn <BR />
**[[3rn6]] – EcCDDA + Zn + iso-guanine<BR />
**[[3rn6]] – EcCDDA + Zn + iso-guanine<BR />
Line 55: Line 58:


**[[2w4l]] – hDCMP<BR />
**[[2w4l]] – hDCMP<BR />
**[[88vl]] – hDCMP + HIV VIF + CBF-beta + EloB + EloC + RNA – Cryo EM<BR />
**[[7uu3]], [[7uu4]], [[7uu5]], [[8edj]] – rmDCMP + RNA – rhesus monkey<BR />
**[[8tvc]], [[8tx4]] – rmDCMP + DNA <BR />
**[[8e40]] – rmDCMP + HIV VIF + CBF-beta + RNA – Cryo EM<BR />
**[[5jfy]] – DCMP - cabbage<BR />
**[[5jfy]] – DCMP - cabbage<BR />
**[[2hvv]], [[2hvw]] – SmDCMP  - ''Streptococcus mutans'' <BR />
**[[2hvv]], [[2hvw]] – SmDCMP  - ''Streptococcus mutans'' <BR />
Line 75: Line 82:
**[[2i9u]] – GDA + guanine – ''Clostridium acetobutylicum'' <BR />
**[[2i9u]] – GDA + guanine – ''Clostridium acetobutylicum'' <BR />
**[[2ood]] – GDA + guanine – ''Bradrhizobium japonicum'' <BR />
**[[2ood]] – GDA + guanine – ''Bradrhizobium japonicum'' <BR />
**[[4lc5]], [[4lcn]], [[4hrq]] – NeGDA + guanine  derivative<BR />
**[[4lc5]], [[4lcn]], [[4hrq]], [[7c3t]], [[7c3u]] – NeGDA + guanine  derivative<BR />
**[[4hrw]] – NeGDA (mutant) + guanine  derivative<BR />
**[[4hrw]] – NeGDA (mutant) + guanine  derivative<BR />
**[[4lco]] – NeGDA + ameline<BR />
**[[4lco]] – NeGDA + ameline<BR />
Line 81: Line 88:
**[[4ld2]] – NeGDA + cytidine<BR />
**[[4ld2]] – NeGDA + cytidine<BR />
**[[4ld4]] – NeGDA + cytosine<BR />
**[[4ld4]] – NeGDA + cytosine<BR />
*Guanosine deaminase
**[[7dbf]] – AtGSDA + Zn<br />
**[[7dc9]] – AtGSDA + Zn + GMP<br />
**[[7dca]] – AtGSDA + Zn + xanthosine<br />
**[[7dcb]] – AtGSDA + Zn + inosine<br />
**[[7dm6]] – AtGSDA + Zn + crotonoside<br />
**[[7dcw]] – AtGSDA + Zn + adeosine<br />
**[[7dgc]], [[7dh1]], [[7dlc]], [[7dm5]], [[7dox]], [[7dow]], [[7doy]], [[7dpk]] – AtGSDA + Zn + guanosine derivative<br />
**[[7dqn]], [[7w1q]] – AtGSDA (mutant) + Zn + guanosine derivative<br />


*Adenine deaminase
*Adenine deaminase
Line 105: Line 123:
**[[4r7t]] – VcGPD <br />
**[[4r7t]] – VcGPD <br />
**[[5hj5]] – VcGPD  + fructose 6-phosphate + glucose-6-phosphate<BR />
**[[5hj5]] – VcGPD  + fructose 6-phosphate + glucose-6-phosphate<BR />
**[[7lqm]] – GPD – ''Pasteurelia multocida'' <BR />
**[[7lqn]] – GPD –'' Haemophilus influenzae''<BR />
**[[8eol]] – SdGPD – ''Shewanella denitrificans''<BR />
**[[8eym]] – SdGPD  + glucosamine-6-phosphate derivatives<BR />


*1-aminocyclopropane-1-carboxylate (ACC) deaminase
*1-aminocyclopropane-1-carboxylate (ACC) deaminase
Line 160: Line 183:
**[[3iau]] – THD + PLP derivative – tomato<BR />
**[[3iau]] – THD + PLP derivative – tomato<BR />
**[[1tdj]] – EcTHD + PLP <BR />
**[[1tdj]] – EcTHD + PLP <BR />
**[[8zkv]] – EcTHD (mutant) + PLP <BR />
**[[43cq]] – EcTHD + PLP derivative <BR />
**[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR />
**[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR />
**[[2gn2]] – StTHD + PLP derivative + CMP<BR />
**[[2gn2]] – StTHD + PLP derivative + CMP<BR />
**[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR />
**[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR />
**[[8y1j]] – THD + PLP derivative – ''Pseudomonas aeruginosa''<BR />


*L-serine deaminase
*L-serine deaminase

Latest revision as of 15:55, 9 August 2026

3D Structures of deaminase

Updated on 09-August-2026

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Jaime Prilusky, Joel L. Sussman

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