2fb9: Difference between revisions

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[[Image:2fb9.gif|left|200px]]


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==Crystal structure of the Apo form of D-alanine: D-alanine ligase (Ddl) from Thermus caldophilus: a basis for the substrate-induced conformational changes==
The line below this paragraph, containing "STRUCTURE_2fb9", creates the "Structure Box" on the page.
<StructureSection load='2fb9' size='340' side='right'caption='[[2fb9]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2fb9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_caldophilus Thermus caldophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FB9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FB9 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fb9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fb9 OCA], [https://pdbe.org/2fb9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fb9 RCSB], [https://www.ebi.ac.uk/pdbsum/2fb9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fb9 ProSAT]</span></td></tr>
{{STRUCTURE_2fb9| PDB=2fb9 |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q3T920_THECA Q3T920_THECA] Cell wall formation (By similarity).[HAMAP-Rule:MF_00047][SAAS:SAAS005905_004_000867]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fb/2fb9_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fb9 ConSurf].
<div style="clear:both"></div>


'''Crystal structure of the Apo form of D-alanine: D-alanine ligase (Ddl) from Thermus caldophilus: a basis for the substrate-induced conformational changes'''
==See Also==
 
*[[D-alanine-D-alanine ligase 3D structures|D-alanine-D-alanine ligase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2FB9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_caldophilus Thermus caldophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FB9 OCA].
[[Category: Large Structures]]
 
==Reference==
Crystal structure of the apo form of D-alanine: D-alanine ligase (Ddl) from Thermus caldophilus: a basis for the substrate-induced conformational changes., Lee JH, Na Y, Song HE, Kim D, Park BH, Rho SH, Im YJ, Kim MK, Kang GB, Lee DS, Eom SH, Proteins. 2006 Sep 1;64(4):1078-82. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16779845 16779845]
[[Category: D-alanine--D-alanine ligase]]
[[Category: Single protein]]
[[Category: Thermus caldophilus]]
[[Category: Thermus caldophilus]]
[[Category: Eom, S H.]]
[[Category: Eom SH]]
[[Category: Lee, J H.]]
[[Category: Lee JH]]
[[Category: Na, Y.]]
[[Category: Na Y]]
[[Category: Ligase]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 03:41:19 2008''

Latest revision as of 13:50, 13 March 2024

Crystal structure of the Apo form of D-alanine: D-alanine ligase (Ddl) from Thermus caldophilus: a basis for the substrate-induced conformational changes

2fb9, resolution 1.90Å

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