1evo: Difference between revisions

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{{Seed}}
[[Image:1evo.png|left|200px]]


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==NMR OBSERVATION OF A NOVEL C-TETRAD==
The line below this paragraph, containing "STRUCTURE_1evo", creates the "Structure Box" on the page.
<StructureSection load='1evo' size='340' side='right'caption='[[1evo]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1evo]] is a 4 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EVO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EVO FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1evo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1evo OCA], [https://pdbe.org/1evo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1evo RCSB], [https://www.ebi.ac.uk/pdbsum/1evo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1evo ProSAT]</span></td></tr>
{{STRUCTURE_1evo|  PDB=1evo  |  SCENE=  }}
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
We report the NMR structure of the DNA sequence d-TGGGCGGT in Na(+) solutions at neutral pH, containing a repeat sequence from SV40 viral genome. The structure is a novel quadruplex incorporating the C-tetrad formed by symmetrical pairing of four Cs via NH(2)&bond;O(2) H-bonds in a plane. The C-tetrad has a wider cavity compared to G-tetrads and stacks well over the adjacent G4-tetrad, but poorly on the G6 tetrad. The quadruplex helix is largely underwound by 8-10 degrees compared to B-DNA except at the C5-G6 step. To our knowledge this is the first report of C-tetrad formation in DNA structures, and would be of significance from the point of view of both structural diversity and specific recognition.


===NMR OBSERVATION OF A NOVEL C-TETRAD===
NMR observation of a novel C-tetrad in the structure of the SV40 repeat sequence GGGCGG.,Patel PK, Bhavesh NS, Hosur RV Biochem Biophys Res Commun. 2000 Apr 21;270(3):967-71. PMID:10772934<ref>PMID:10772934</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The line below this paragraph, {{ABSTRACT_PUBMED_10772934}}, adds the Publication Abstract to the page
<div class="pdbe-citations 1evo" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 10772934 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_10772934}}
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</StructureSection>
==About this Structure==
[[Category: Large Structures]]
Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EVO OCA].
[[Category: Bhavesh NS]]
 
[[Category: Hosur RV]]
==Reference==
[[Category: Patel PK]]
NMR observation of a novel C-tetrad in the structure of the SV40 repeat sequence GGGCGG., Patel PK, Bhavesh NS, Hosur RV, Biochem Biophys Res Commun. 2000 Apr 21;270(3):967-71. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10772934 10772934]
[[Category: Bhavesh, N S.]]
[[Category: Hosur, R V.]]
[[Category: Patel, P K.]]
[[Category: C-tetrad]]
[[Category: G-quadruplex]]
[[Category: Gggcgg repeat]]
[[Category: Nmr structure]]
[[Category: Sv40]]
 
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