2zoy: Difference between revisions

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{{Seed}}
[[Image:2zoy.png|left|200px]]


<!--
==The multi-drug binding transcriptional repressor CgmR (CGL2612 protein) from C.glutamicum==
The line below this paragraph, containing "STRUCTURE_2zoy", creates the "Structure Box" on the page.
<StructureSection load='2zoy' size='340' side='right'caption='[[2zoy]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2zoy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum_ATCC_13032 Corynebacterium glutamicum ATCC 13032]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1v7b 1v7b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZOY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZOY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
{{STRUCTURE_2zoy|  PDB=2zoy |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zoy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zoy OCA], [https://pdbe.org/2zoy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zoy RCSB], [https://www.ebi.ac.uk/pdbsum/2zoy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zoy ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q8NMG3_CORGL Q8NMG3_CORGL]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zo/2zoy_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zoy ConSurf].
<div style="clear:both"></div>


===The multi-drug binding transcriptional repressor CgmR (CGL2612 protein) from C.glutamicum===
==See Also==
 
*[[Tetracycline repressor protein 3D structures|Tetracycline repressor protein 3D structures]]
 
*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
<!--
__TOC__
The line below this paragraph, {{ABSTRACT_PUBMED_16166084}}, adds the Publication Abstract to the page
</StructureSection>
(as it appears on PubMed at http://www.pubmed.gov), where 16166084 is the PubMed ID number.
[[Category: Corynebacterium glutamicum ATCC 13032]]
-->
[[Category: Large Structures]]
{{ABSTRACT_PUBMED_16166084}}
[[Category: Itou H]]
 
[[Category: Tanaka I]]
==About this Structure==
[[Category: Watanabe N]]
2ZOY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Corynebacterium_glutamicum_atcc_13032 Corynebacterium glutamicum atcc 13032]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1v7b 1v7b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZOY OCA].
[[Category: Yao M]]
 
==Reference==
The CGL2612 protein from Corynebacterium glutamicum is a drug resistance-related transcriptional repressor: structural and functional analysis of a newly identified transcription factor from genomic DNA analysis., Itou H, Okada U, Suzuki H, Yao M, Wachi M, Watanabe N, Tanaka I, J Biol Chem. 2005 Nov 18;280(46):38711-9. Epub 2005 Sep 15. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16166084 16166084]
[[Category: Corynebacterium glutamicum atcc 13032]]
[[Category: Single protein]]
[[Category: Itou, H.]]
[[Category: Tanaka, I.]]
[[Category: Watanabe, N.]]
[[Category: Yao, M.]]
[[Category: Dna-binding]]
[[Category: Gene regulation]]
[[Category: Helix turn helix]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 17:36:40 2008''

Latest revision as of 13:58, 13 March 2024

The multi-drug binding transcriptional repressor CgmR (CGL2612 protein) from C.glutamicum

2zoy, resolution 1.90Å

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