1ynp: Difference between revisions

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{{Seed}}
[[Image:1ynp.png|left|200px]]


<!--
==aldo-keto reductase AKR11C1 from Bacillus halodurans (apo form)==
The line below this paragraph, containing "STRUCTURE_1ynp", creates the "Structure Box" on the page.
<StructureSection load='1ynp' size='340' side='right'caption='[[1ynp]], [[Resolution|resolution]] 1.25&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1ynp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans_C-125 Alkalihalobacillus halodurans C-125]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YNP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YNP FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.25&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1ynp| PDB=1ynp |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ynp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ynp OCA], [https://pdbe.org/1ynp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ynp RCSB], [https://www.ebi.ac.uk/pdbsum/1ynp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ynp ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q9KE47_HALH5 Q9KE47_HALH5]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yn/1ynp_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ynp ConSurf].
<div style="clear:both"></div>


===aldo-keto reductase AKR11C1 from Bacillus halodurans (apo form)===
==See Also==
 
*[[Aldo-keto reductase 3D structures|Aldo-keto reductase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_16242712}}, adds the Publication Abstract to the page
[[Category: Alkalihalobacillus halodurans C-125]]
(as it appears on PubMed at http://www.pubmed.gov), where 16242712 is the PubMed ID number.
[[Category: Large Structures]]
-->
[[Category: Kostrewa D]]
{{ABSTRACT_PUBMED_16242712}}
[[Category: Li XD]]
 
[[Category: Marquardt T]]
==About this Structure==
[[Category: Winkler FK]]
1YNP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_halodurans Bacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YNP OCA].
 
==Reference==
High-resolution crystal structure of AKR11C1 from Bacillus halodurans: an NADPH-dependent 4-hydroxy-2,3-trans-nonenal reductase., Marquardt T, Kostrewa D, Balakrishnan R, Gasperina A, Kambach C, Podjarny A, Winkler FK, Balendiran GK, Li XD, J Mol Biol. 2005 Nov 25;354(2):304-16. Epub 2005 Oct 10. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16242712 16242712]
[[Category: Bacillus halodurans]]
[[Category: Single protein]]
[[Category: Kostrewa, D.]]
[[Category: Li, X D.]]
[[Category: Marquardt, T.]]
[[Category: Winkler, F K.]]
[[Category: Akr11c1]]
[[Category: Aldo-keto reductase]]
[[Category: Bacillus haloduran]]
[[Category: Nadph]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 03:02:15 2008''

Latest revision as of 13:38, 13 March 2024

aldo-keto reductase AKR11C1 from Bacillus halodurans (apo form)

1ynp, resolution 1.25Å

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