2vvt: Difference between revisions

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{{Seed}}
[[Image:2vvt.png|left|200px]]


<!--
==Glutamate Racemase (MurI) from E. faecalis in complex with a 9-Benzyl Purine inhibitor==
The line below this paragraph, containing "STRUCTURE_2vvt", creates the "Structure Box" on the page.
<StructureSection load='2vvt' size='340' side='right'caption='[[2vvt]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2vvt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VVT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VVT FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DGL:D-GLUTAMIC+ACID'>DGL</scene>, <scene name='pdbligand=I24:2-BUTOXY-9-(2,6-DIFLUOROBENZYL)-N-(2-MORPHOLIN-4-YLETHYL)-9H-PURIN-6-AMINE'>I24</scene></td></tr>
{{STRUCTURE_2vvt|  PDB=2vvt  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vvt OCA], [https://pdbe.org/2vvt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vvt RCSB], [https://www.ebi.ac.uk/pdbsum/2vvt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vvt ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/MURI_ENTFA MURI_ENTFA] Provides the (R)-glutamate required for cell wall biosynthesis.[HAMAP-Rule:MF_00258]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vv/2vvt_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vvt ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
An early SAR study of a screening hit series has generated a series of 9-benzyl purines as inhibitors of bacterial glutamate racemase (MurI) with micromolar enzyme potency and improved physical properties. X-ray co-crystal EI structures were obtained.


===GLUTAMATE RACEMASE (MURI) FROM E. FAECALIS IN COMPLEX WITH A 9-BENZYL PURINE INHIBITOR===
Exploring 9-benzyl purines as inhibitors of glutamate racemase (MurI) in Gram-positive bacteria.,Geng B, Breault G, Comita-Prevoir J, Petrichko R, Eyermann C, Lundqvist T, Doig P, Gorseth E, Noonan B Bioorg Med Chem Lett. 2008 Aug 1;18(15):4368-72. Epub 2008 Jun 24. PMID:18614367<ref>PMID:18614367</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 2vvt" style="background-color:#fffaf0;"></div>


<!--
==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_18614367}}, adds the Publication Abstract to the page
*[[Glutamate racemase 3D structures|Glutamate racemase 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 18614367 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_18614367}}
__TOC__
 
</StructureSection>
==About this Structure==
2VVT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VVT OCA].
 
==Reference==
Exploring 9-benzyl purines as inhibitors of glutamate racemase (MurI) in Gram-positive bacteria., Geng B, Breault G, Comita-Prevoir J, Petrichko R, Eyermann C, Lundqvist T, Doig P, Gorseth E, Noonan B, Bioorg Med Chem Lett. 2008 Aug 1;18(15):4368-72. Epub 2008 Jun 24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18614367 18614367]
[[Category: Enterococcus faecalis]]
[[Category: Enterococcus faecalis]]
[[Category: Glutamate racemase]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Breault G]]
[[Category: Breault, G.]]
[[Category: Comita-Prevoir J]]
[[Category: Comita-Prevoir, J.]]
[[Category: Doig P]]
[[Category: Doig, P.]]
[[Category: Eyermann C]]
[[Category: Eyermann, C.]]
[[Category: Geng B]]
[[Category: Geng, B.]]
[[Category: Gorseth E]]
[[Category: Gorseth, E.]]
[[Category: Lundqvist T]]
[[Category: Lundqvist, T.]]
[[Category: Noonan B]]
[[Category: Noonan, B.]]
[[Category: Petrichko R]]
[[Category: Petrichko, R.]]
[[Category: Benzyl purine]]
[[Category: Cell shape]]
[[Category: Cell wall biogenesis/degradation]]
[[Category: Glutamate racemase]]
[[Category: Isomerase]]
[[Category: Muri inhibitor]]
[[Category: Peptidoglycan synthesis]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug  6 09:49:51 2008''

Latest revision as of 15:34, 13 December 2023

Glutamate Racemase (MurI) from E. faecalis in complex with a 9-Benzyl Purine inhibitor

2vvt, resolution 1.65Å

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