3dze: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3dze.png|left|200px]]


<!--
==Crystal structure of bovine coupling Factor B bound with cadmium==
The line below this paragraph, containing "STRUCTURE_3dze", creates the "Structure Box" on the page.
<StructureSection load='3dze' size='340' side='right'caption='[[3dze]], [[Resolution|resolution]] 1.15&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dze]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DZE FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.15&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
{{STRUCTURE_3dze| PDB=3dze |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dze FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dze OCA], [https://pdbe.org/3dze PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dze RCSB], [https://www.ebi.ac.uk/pdbsum/3dze PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dze ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/ATP5S_BOVIN ATP5S_BOVIN] Involved in regulation of mitochondrial membrane ATP synthase. Necessary for H(+) conduction of ATP synthase. Facilitates energy-driven catalysis of ATP synthesis by blocking a proton leak through an alternative proton exit pathway.<ref>PMID:12361715</ref> <ref>PMID:18768789</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/3dze_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dze ConSurf].
<div style="clear:both"></div>


===Crystal structure of bovine coupling Factor B bound with cadmium===
==See Also==
 
*[[ATPase 3D structures|ATPase 3D structures]]
 
== References ==
<!--
<references/>
The line below this paragraph, {{ABSTRACT_PUBMED_18768789}}, adds the Publication Abstract to the page
__TOC__
(as it appears on PubMed at http://www.pubmed.gov), where 18768789 is the PubMed ID number.
</StructureSection>
-->
{{ABSTRACT_PUBMED_18768789}}
 
==About this Structure==
3DZE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZE OCA].
 
==Reference==
Crystal structure of bovine mitochondrial factor B at 0.96-A resolution., Lee JK, Belogrudov GI, Stroud RM, Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13379-84. Epub 2008 Sep 3. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18768789 18768789]
[[Category: Bos taurus]]
[[Category: Bos taurus]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Belogrudov, G I.]]
[[Category: Belogrudov GI]]
[[Category: Lee, J K.]]
[[Category: Lee JK]]
[[Category: Stroud, R M.]]
[[Category: Stroud RM]]
[[Category: Electron transport]]
[[Category: Hydrogen ion transport]]
[[Category: Ion transport]]
[[Category: Leucine-rich repeat]]
[[Category: Membrane]]
[[Category: Mitochondrion]]
[[Category: Mitochondrion inner membrane]]
[[Category: Transit peptide]]
[[Category: Transport]]
[[Category: Transport protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 17 13:02:47 2008''

Latest revision as of 09:43, 21 February 2024

Crystal structure of bovine coupling Factor B bound with cadmium

3dze, resolution 1.15Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=3dze&oldid=4064366"