1pux: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(11 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:1pux.png|left|200px]]


<!--
==NMR Solution Structure of BeF3-Activated Spo0F, 20 conformers==
The line below this paragraph, containing "STRUCTURE_1pux", creates the "Structure Box" on the page.
<StructureSection load='1pux' size='340' side='right'caption='[[1pux]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1pux]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PUX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PUX FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pux FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pux OCA], [https://pdbe.org/1pux PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pux RCSB], [https://www.ebi.ac.uk/pdbsum/1pux PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pux ProSAT]</span></td></tr>
{{STRUCTURE_1pux|  PDB=1pux  |  SCENE=  }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/SP0F_BACSU SP0F_BACSU] Key element in the phosphorelay regulating sporulation initiation. Phosphorylation of spo0B during sporulation initiation.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pu/1pux_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pux ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Two-component systems, which are comprised of a single histidine-aspartate phosphotransfer module, are the dominant signaling pathways in bacteria and have recently been identified in several eukaryotic organisms as well. A tandem connection of two or more histidine-aspartate motifs forms complex phosphorelays. While response regulators from simple two-component systems have been characterized structurally in their inactive and active forms, we address here the question of whether a response regulator from a phosphorelay has a distinct structural basis of activation. We report the NMR solution structure of BeF(3)(-)-activated Spo0F, the first structure of a response regulator from a phosphorelay in its activated state. Conformational changes were found in regions previously identified to change in simple two-component systems. In addition, a downward shift by half a helical turn in helix 1, located on the opposite side of the common activation surface, was observed as a consequence of BeF(3)(-) activation. Conformational changes in helix 1 can be rationalized by the distinct function of phosphoryl transfer to the second histidine kinase, Spo0B, because helix 1 is known to interact directly with Spo0B and the phosphatase RapB. The identification of structural rearrangements in Spo0F supports the hypothesis of a pre-existing equilibrium between the inactive and active state prior to phosphorylation that was suggested on the basis of previous NMR dynamics studies on Spo0F. A shift of a pre-existing equilibrium is likely a general feature of response regulators.


===NMR Solution Structure of BeF3-Activated Spo0F, 20 conformers===
The NMR solution structure of BeF(3)(-)-activated Spo0F reveals the conformational switch in a phosphorelay system.,Gardino AK, Volkman BF, Cho HS, Lee SY, Wemmer DE, Kern D J Mol Biol. 2003 Aug 1;331(1):245-54. PMID:12875849<ref>PMID:12875849</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1pux" style="background-color:#fffaf0;"></div>


<!--
==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_12875849}}, adds the Publication Abstract to the page
*[[Phosphotransferase 3D structures|Phosphotransferase 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 12875849 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_12875849}}
__TOC__
 
</StructureSection>
==About this Structure==
1PUX is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PUX OCA].
 
==Reference==
<ref group="xtra">PMID:12875849</ref><references group="xtra"/>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Cho, H S.]]
[[Category: Large Structures]]
[[Category: Gardino, A K.]]
[[Category: Cho HS]]
[[Category: Kern, D.]]
[[Category: Gardino AK]]
[[Category: Lee, S Y.]]
[[Category: Kern D]]
[[Category: Volkman, B F.]]
[[Category: Lee SY]]
[[Category: Wemmer, D E.]]
[[Category: Volkman BF]]
[[Category: Beryllofluoride]]
[[Category: Wemmer DE]]
[[Category: Phosphorelay]]
[[Category: Response regulator]]
[[Category: Sporulation]]
[[Category: Two-component system]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 22:31:49 2009''

Latest revision as of 09:00, 22 May 2024

NMR Solution Structure of BeF3-Activated Spo0F, 20 conformers

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA