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New page: left|200px<br /><applet load="2h0b" size="450" color="white" frame="true" align="right" spinBox="true" caption="2h0b, resolution 2.100Å" /> '''Crystal Structure o...
 
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[[Image:2h0b.gif|left|200px]]<br /><applet load="2h0b" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2h0b, resolution 2.100&Aring;" />
'''Crystal Structure of the second LNS/LG domain from Neurexin 1 alpha'''<br />


==Overview==
==Crystal Structure of the second LNS/LG domain from Neurexin 1 alpha==
Neurexins mediate protein interactions at the synapse, playing an, essential role in synaptic function. Extracellular domains of neurexins, and their fragments, bind a distinct profile of different proteins, regulated by alternative splicing and Ca2+. The crystal structure of, n1alpha_LNS#2 (the second LNS/LG domain of bovine neurexin 1alpha) reveals, large structural differences compared with n1alpha_LNS#6 (or n1beta_LNS), the only other LNS/LG domain for which a structure has been determined., The differences overlap the so-called hyper-variable surface, the putative, protein interaction surface that is reshaped as a result of alternative, splicing. A Ca2+-binding site is revealed at the center of the, hyper-variable surface next to splice insertion sites. Isothermal, titration calorimetry indicates that the Ca2+-binding site in, n1alpha_LNS#2 has low affinity (Kd approximately 400 microm). Ca2+ binding, ceases to be measurable when an 8- or 15-residue splice insert is present, at the splice site SS#2 indicating that alternative splicing can affect, Ca2+-binding sites of neurexin LNS/LG domains. Our studies initiate a, framework for the putative protein interaction sites of neurexin LNS/LG, domains. This framework is essential to understand how incorporation of, alternative splice inserts expands the information from a limited set of, neurexin genes to produce a large array of synaptic adhesion molecules, with potentially very different synaptic function.
<StructureSection load='2h0b' size='340' side='right'caption='[[2h0b]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2h0b]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2H0B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2H0B FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2h0b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h0b OCA], [https://pdbe.org/2h0b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2h0b RCSB], [https://www.ebi.ac.uk/pdbsum/2h0b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2h0b ProSAT]</span></td></tr>
</table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h0/2h0b_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2h0b ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Neurexins mediate protein interactions at the synapse, playing an essential role in synaptic function. Extracellular domains of neurexins, and their fragments, bind a distinct profile of different proteins regulated by alternative splicing and Ca2+. The crystal structure of n1alpha_LNS#2 (the second LNS/LG domain of bovine neurexin 1alpha) reveals large structural differences compared with n1alpha_LNS#6 (or n1beta_LNS), the only other LNS/LG domain for which a structure has been determined. The differences overlap the so-called hyper-variable surface, the putative protein interaction surface that is reshaped as a result of alternative splicing. A Ca2+-binding site is revealed at the center of the hyper-variable surface next to splice insertion sites. Isothermal titration calorimetry indicates that the Ca2+-binding site in n1alpha_LNS#2 has low affinity (Kd approximately 400 microm). Ca2+ binding ceases to be measurable when an 8- or 15-residue splice insert is present at the splice site SS#2 indicating that alternative splicing can affect Ca2+-binding sites of neurexin LNS/LG domains. Our studies initiate a framework for the putative protein interaction sites of neurexin LNS/LG domains. This framework is essential to understand how incorporation of alternative splice inserts expands the information from a limited set of neurexin genes to produce a large array of synaptic adhesion molecules with potentially very different synaptic function.


==About this Structure==
Crystal structure of the second LNS/LG domain from neurexin 1alpha: Ca2+ binding and the effects of alternative splicing.,Sheckler LR, Henry L, Sugita S, Sudhof TC, Rudenko G J Biol Chem. 2006 Aug 11;281(32):22896-905. Epub 2006 Jun 13. PMID:16772286<ref>PMID:16772286</ref>
2H0B is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus] with CA and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2H0B OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Crystal structure of the second LNS/LG domain from neurexin 1alpha: Ca2+ binding and the effects of alternative splicing., Sheckler LR, Henry L, Sugita S, Sudhof TC, Rudenko G, J Biol Chem. 2006 Aug 11;281(32):22896-905. Epub 2006 Jun 13. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16772286 16772286]
</div>
<div class="pdbe-citations 2h0b" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[Neurexin|Neurexin]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Bos taurus]]
[[Category: Bos taurus]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Henry, L.]]
[[Category: Henry L]]
[[Category: Rudenko, G.]]
[[Category: Rudenko G]]
[[Category: Sheckler, L.R.]]
[[Category: Sheckler LR]]
[[Category: Sudhof, T.C.]]
[[Category: Sudhof TC]]
[[Category: Sugita, S.]]
[[Category: Sugita S]]
[[Category: CA]]
[[Category: GOL]]
[[Category: b-sandwich]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 11:28:47 2007''

Latest revision as of 00:59, 21 November 2024

Crystal Structure of the second LNS/LG domain from Neurexin 1 alpha

2h0b, resolution 2.10Å

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