3gm6: Difference between revisions
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New page: '''Unreleased structure''' The entry 3gm6 is ON HOLD Authors: Trofimov, A.A., Polyakov, K.M., Boyko, K.M., Filimonenkov, A.A., Dorovatovsky, P.V., Tikhonova, T.V., Popov, V.O. Descript... |
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==Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with phosphate== | |||
<StructureSection load='3gm6' size='340' side='right'caption='[[3gm6]], [[Resolution|resolution]] 1.80Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[3gm6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thioalkalivibrio_nitratireducens Thioalkalivibrio nitratireducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GM6 FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gm6 OCA], [https://pdbe.org/3gm6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gm6 RCSB], [https://www.ebi.ac.uk/pdbsum/3gm6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gm6 ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/NIR_THIND NIR_THIND] Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process (PubMed:16500161, PubMed:22281743). Has very low activity toward hydroxylamine (PubMed:16500161). Has even lower activity toward sulfite (PubMed:16500161, PubMed:22281743). Sulfite reductase activity is maximal at neutral pH (PubMed:20944237).<ref>PMID:16500161</ref> <ref>PMID:20944237</ref> <ref>PMID:22281743</ref> | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gm/3gm6_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gm6 ConSurf]. | |||
<div style="clear:both"></div> | |||
==See Also== | |||
*[[Cytochrome c nitrite reductase|Cytochrome c nitrite reductase]] | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Thioalkalivibrio nitratireducens]] | |||
[[Category: Boyko KM]] | |||
[[Category: Dorovatovsky PV]] | |||
[[Category: Filimonenkov AA]] | |||
[[Category: Polyakov KM]] | |||
[[Category: Popov VO]] | |||
[[Category: Tikhonova TV]] | |||
[[Category: Trofimov AA]] | |||
Latest revision as of 05:51, 17 October 2024
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with phosphate
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