ATPase: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older editNewer edit →
Michal Harel (talk | contribs)
32,831 edits
No edit summary
Michal Harel (talk | contribs)
32,831 edits
No edit summary
Line 29: Line 29:


Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|


===F-ATPase===
*'''F-ATPase'''


''F1F0 ATPase α subunit''
*''F1F0 ATPase α subunit''


[[2jmx]] - bF1-ATPS+subunit O<br />
**[[2jmx]] - bF1-ATPS+subunit O<br />
[[2r9v]] - F1-ATPS – ''Thermotoga maritima''
**[[2r9v]] - F1-ATPS – ''Thermotoga maritima''


''F1F0 ATPase β subunit''
*''F1F0 ATPase β subunit''


[[1b9u]] – EcF1-ATPS membrane domain – ''Escherichia coli'' -NMR<BR />
**[[1b9u]] – EcF1-ATPS membrane domain – ''Escherichia coli'' -NMR<BR />
[[1l2p]] – EcF1-ATPS dimerization domain<br />
**[[1l2p]] – EcF1-ATPS dimerization domain<br />
[[2khk]] - EcF1-ATPS fragment – NMR<BR />
**[[2khk]] - EcF1-ATPS fragment – NMR<BR />
[[1pyv]] - F1-ATPS – NMR – tobacco<br />
**[[1pyv]] - F1-ATPS – NMR – tobacco<br />


''F1F0 ATPase γ subunit''
*''F1F0 ATPase γ subunit''


[[1wu0]] – BsATPS – NMR<BR />
**[[1wu0]] – BsATPS – NMR<BR />
[[1a91]], [[1c0v]], [[1aty]], [[1c99]] - EcF1-ATPS – NMR<BR />
**[[1a91]], [[1c0v]], [[1aty]], [[1c99]] - EcF1-ATPS – NMR<BR />
[[2wgm]], [[1yce]] – F0-ATPS – ''Ilyobacter tartaricus''<br />
**[[2wgm]], [[1yce]] – F0-ATPS – ''Ilyobacter tartaricus''<br />
[[2x2v]] – F0-ATPS – ''Bacillus pseudofirmus''<br />
**[[2x2v]] – F0-ATPS – ''Bacillus pseudofirmus''<br />


''F1F0 ATPase δ subunit''
*''F1F0 ATPase δ subunit''


[[1abv]] – EcF1-ATPS N terminal – NMR<BR />
**[[1abv]] – EcF1-ATPS N terminal – NMR<BR />


''F1F0 ATPase ε subunit''
*''F1F0 ATPase ε subunit''


[[2rq6]], [[2rq7]] - F1-ATPS – ''Thermosynechococcus elongatus''<br />
**[[2rq6]], [[2rq7]] - F1-ATPS – ''Thermosynechococcus elongatus''<br />
[[1abv]], [[1aqt]] – EcF1-ATPS (mutant)<br />
**[[1abv]], [[1aqt]] – EcF1-ATPS (mutant)<br />
[[1bsh]], [[1bsn]] – EcF1-ATPS – NMR<BR />
**[[1bsh]], [[1bsn]] – EcF1-ATPS – NMR<BR />
[[2e5t]], [[2e5u]] – BsF1-ATPS C terminal – NMR<BR />
**[[2e5t]], [[2e5u]] – BsF1-ATPS C terminal – NMR<BR />
[[2e5y]] – BsF1-ATPS
**[[2e5y]] – BsF1-ATPS


''F1F0 ATPase α, β subunits''
*''F1F0 ATPase α, β subunits''


[[1sky]] – BsF1-ATPS – Bacillus sp. Ps3
**[1sky]] – BsF1-ATPS – Bacillus sp. Ps3


''F1F0 ATPase α,γ subunits''
*''F1F0 ATPase α,γ subunits''


[[1c17]] – EcF1-ATPS – NMR<br />
**[[1c17]] – EcF1-ATPS – NMR<br />


''F1F0 ATPase α, δ subunits''
*''F1F0 ATPase α, δ subunits''


[[2a7u]] – EcF1-ATPS N termini – NMR<BR />
**[[2a7u]] – EcF1-ATPS N termini – NMR<BR />


''F1F0 ATPase β, δ subunits''
*''F1F0 ATPase β, δ subunits''


[[2cly]] – bF1-ATPS + ATPS coupling factor
**[[2cly]] – bF1-ATPS + ATPS coupling factor


''F1F0 ATPase γ, ε subunits''
*''F1F0 ATPase γ, ε subunits''


[[1fs0]] – EcF1-ATPS
**[[1fs0]] – EcF1-ATPS


''F1F0 ATPase α, β, γ subunits''
*''F1F0 ATPase α, β, γ subunits''


[[1ohh]], [[2jiz]] – bF1-ATPS+ IF1 inhibitor – bovine<br />
**[[1ohh]], [[2jiz]] – bF1-ATPS+ IF1 inhibitor – bovine<br />
[[1e1q]], [[2w6e]], [[2w6f]], [[2w6g]], [[2w6h]], [[2w6i]], [[2w6j]] - bF1-ATPS<br />
**[[1e1q]], [[2w6e]], [[2w6f]], [[2w6g]], [[2w6h]], [[2w6i]], [[2w6j]] - bF1-ATPS<br />
[[1e1r]] - bF1-ATPS+Mg+ADP+AlF4<br />
**[[1e1r]] - bF1-ATPS+Mg+ADP+AlF4<br />
[[1w0j]], [[1w0k]] -  bF1-ATPS+BeF3<br />
**[[1w0j]], [[1w0k]] -  bF1-ATPS+BeF3<br />
[[1nbm]] -  bF1-ATPS+nitrobenzofurazan<br />
**[[1nbm]] -  bF1-ATPS+nitrobenzofurazan<br />
[[1mab]], [[2f43]] - F1-ATPS – rat
**[[1mab]], [[2f43]] - F1-ATPS – rat


''F1F0 ATPase α,β,γ,δ subunits''
*''F1F0 ATPase α,β,γ,δ subunits''


[[1qo1]] - yF1-ATPS + protein 9<br />
**[[1qo1]] - yF1-ATPS + protein 9<br />


''F1F0 ATPase α,β,γ,ε subunits''
*''F1F0 ATPase α,β,γ,ε subunits''


[[1jnv]] - EcF1-ATPS <br />
**[[1jnv]] - EcF1-ATPS <br />
[[3oaa]] – EcF1-ATPS (mutant)<br />
**[[3oaa]] – EcF1-ATPS (mutant)<br />
[[2qe7]] – F1-ATPS – ''Bacillus''<br />
**[[2qe7]] – F1-ATPS – ''Bacillus''<br />


''F1F0 ATPase α, β, γ, δ, ε subunits''
*''F1F0 ATPase α, β, γ, δ, ε subunits''


[[4asu]], [[2jdi]], [[2jj1]], [[2jj2]] - bF1-ATPS<br />
**[[4asu]], [[2jdi]], [[2jj1]], [[2jj2]] - bF1-ATPS<br />
[[2v7q]], [[1e79]], [[2ck3]] -  bF1-ATPS+inhibitor<br />
**[[2v7q]], [[1e79]], [[2ck3]] -  bF1-ATPS+inhibitor<br />
[[2xnd]], [[2xok]] - bF1-ATPS+ATPS lipid-binding protein<br />
**[[2xnd]], [[2xok]] - bF1-ATPS+ATPS lipid-binding protein<br />
[[2wpd]], [[2wss]] - yF1-ATPS+subunit 9+Mg+ADP+ATP<br />
**[[2wpd]], [[2wss]] - yF1-ATPS+subunit 9+Mg+ADP+ATP<br />
[[3oe7]], [[3oee]], [[3oeh]], [[3ofn]] - yF1-ATPS (mutant)<br />
**[[3oe7]], [[3oee]], [[3oeh]], [[3ofn]] - yF1-ATPS (mutant)<br />
[[3fks]], [[3zry]], [[2hld]] - yF1-ATPS<br />
**[[3fks]], [[3zry]], [[2hld]] - yF1-ATPS<br />
[[2zia]] - bF1-ATPS+inhibitor protein<br />
**[[2zia]] - bF1-ATPS+inhibitor protein<br />
[[3j0j]] – TtATPS α,β,γ,δ,ε,ζ - Cryo EM<br />
**[[3j0j]] – TtATPS α,β,γ,δ,ε,ζ - Cryo EM<br />
[[1e79]] - bF1-ATPS<br />
**[[1e79]] - bF1-ATPS<br />


''F1F0 ATPase α,β,γ,δ,ε,9,B,D,6,O subunits''
*''F1F0 ATPase α,β,γ,δ,ε,9,B,D,6,O subunits''


[[4b2q]] – yATPase subunits α,β,γ,δ,ε +9,B,D,6,O – Cryo EM
**[[4b2q]] – yATPase subunits α,β,γ,δ,ε +9,B,D,6,O – Cryo EM


[[1bmf]] - bF1-ATPS<br />
**[[1bmf]] - bF1-ATPS<br />
[[3dze]] – bF1-ATPS subunit S<br />
**[[3dze]] – bF1-ATPS subunit S<br />
[[1cow]] - bF1-ATPS+aurovertin B<br />
**[[1cow]] - bF1-ATPS+aurovertin B<br />
[[4f4s]] – yATPase subunit 9 + oligomycin <br />
**[[4f4s]] – yATPase subunit 9 + oligomycin <br />


===V-ATPase===
*'''V-ATPase'''


''V-ATPase subunit A''
*''V-ATPase subunit A''


[[3i4l]] - PhATPS subunit A+AMPPNP<br />
**[[3i4l]] - PhATPS subunit A+AMPPNP<br />
[[3mfy]], [[3m4y]], [[3nd8]], [[3nd9]], [[3p20]], [[3qg1]], [[3qia]], [[3qjy]], [[3sdz]], [[3se0]] - PhATPS subunit A  
**[[3mfy]], [[3m4y]], [[3nd8]], [[3nd9]], [[3p20]], [[3qg1]], [[3qia]], [[3qjy]], [[3sdz]], [[3se0]] - PhATPS subunit A  
mutant)<br />
mutant)<br />
[[3i72]], [[3i73]], [[3ikj]] - TtATPS subunit A (mutant)<br />
**[[3i72]], [[3i73]], [[3ikj]] - TtATPS subunit A (mutant)<br />


''V-ATPase subunit B''
*''V-ATPase subunit B''


[[2c61]] - MmATPS subunit B – ''Methanosarcina mazei''<br />
**[[2c61]] - MmATPS subunit B – ''Methanosarcina mazei''<br />
[[2rkw]], [[3b2q]], [[3ssa]], [[3tgw]], [[3tiv]] - MmATPS subunit B (mutant)<br />
**[[2rkw]], [[3b2q]], [[3ssa]], [[3tgw]], [[3tiv]] - MmATPS subunit B (mutant)<br />
[[3dsr]] - MmATPS subunit B+ADP<br />
**[[3dsr]] - MmATPS subunit B+ADP<br />
[[3eiu]] - MmATPS subunit B+ATP<br />
**[[3eiu]] - MmATPS subunit B+ATP<br />


''V-ATPase subunit C''
*''V-ATPase subunit C''


[[1u7l]], [[3u2f]], [[3u2y]], [[3u32]], [[3ud0]] - yATPS subunit C<br />
**[[1u7l]], [[3u2f]], [[3u2y]], [[3u32]], [[3ud0]] - yATPS subunit C<br />
[[3v3c]] - ATPS subunit C - pea<br />
**[[3v3c]] - ATPS subunit C - pea<br />
[[1ijp]], [[1l6t]] – EcF1-ATPS subunit C (mutant) – ''Escherichia coli'' - NMR<br />
**[[1ijp]], [[1l6t]] – EcF1-ATPS subunit C (mutant) – ''Escherichia coli'' - NMR<br />
[[1r5z]], [[1v9m]] - TtATPS subunit C – ''Thermus thermophilus''<br />
**[[1r5z]], [[1v9m]] - TtATPS subunit C – ''Thermus thermophilus''<br />
[[3lg8]] - MtATPS subunit C C-terminal<br />
**[[3lg8]] - MtATPS subunit C C-terminal<br />
[[2w5j]] - sATPS subunit C - spinach<br />
**[[2w5j]] - sATPS subunit C - spinach<br />
[[2wie]], [[2xqs]], [[2xqt]], [[2xqu]] - ATPS subunit C – ''Arthrospira platensis''<br />
**[[2wie]], [[2xqs]], [[2xqt]], [[2xqu]] - ATPS subunit C – ''Arthrospira platensis''<br />
[[3zk1]], [[3zk2]] - ATPS subunit C – ''Fusobacterium nucleatum''<br />
**[[3zk1]], [[3zk2]] - ATPS subunit C – ''Fusobacterium nucleatum''<br />


''V-ATPase subunit E''
*''V-ATPase subunit E''


[[2kz9]] – yATPase subunit E<br />
**[[2kz9]] – yATPase subunit E<br />
[[2dm9]], [[2dma]], [[4dt0]] - PhATPS subunit E – ''Pyrococcus horikoshii''<br />
**[[2dm9]], [[2dma]], [[4dt0]] - PhATPS subunit E – ''Pyrococcus horikoshii''<br />
[[2kk7]] - MjATPS subunit E – ''Methanocaldococcus jannaschii''<br />
**[[2kk7]] - MjATPS subunit E – ''Methanocaldococcus jannaschii''<br />
[[3v6i]] – TtATPS subunit E + VAPC<br />
**[[3v6i]] – TtATPS subunit E + VAPC<br />


''V-ATPase subunit F''
*''V-ATPase subunit F''


[[2qai]] - ATPS subunit F – ''Pyrococcus furiosus''<br />
**[[2qai]] - ATPS subunit F – ''Pyrococcus furiosus''<br />
[[2i4r]] - ATPS subunit F – ''Archaeoglobus fulgidus''<br />
**[[2i4r]] - ATPS subunit F – ''Archaeoglobus fulgidus''<br />
[[2ov6]] - MmATPS subunit F - NMR<br />
**[[2ov6]] - MmATPS subunit F - NMR<br />
[[2d00]] - TtATPS subunit F <br />
**[[2d00]] - TtATPS subunit F <br />
[[4ix9]] – yATP subunit F (mutant)<br />
**[[4ix9]] – yATP subunit F (mutant)<br />


''V-ATPase subunit G''
*''V-ATPase subunit G''


[[2k88]] - yATPS subunit G - NMR<br />
**[[2k88]] - yATPS subunit G - NMR<br />


''V-ATPase subunit H''
*''V-ATPase subunit H''


[[1ho8]] – yATPS subunit H – yeast<br />
**[[1ho8]] – yATPS subunit H – yeast<br />


''V-ATPase subunit K''
*''V-ATPase subunit K''


[[2bl2]], [[2cyd]] - ATPS subunit K – ''Enterococcus hirae''<br />
**[[2bl2]], [[2cyd]] - ATPS subunit K – ''Enterococcus hirae''<br />


''V-ATPase subunit I''
*''V-ATPase subunit I''


[[3rrk]] – ATPS subunit I N terminal – ''Meiothermus ruber''
**[[3rrk]] – ATPS subunit I N terminal – ''Meiothermus ruber''


[[4dl0]], [[4efa]] - yATPase subunits C,G,E<br />
**[[4dl0]], [[4efa]] - yATPase subunits C,G,E<br />
[[3w3a]] - yATPS subunit A,B,D,F<br />
**[[3w3a]] - yATPS subunit A,B,D,F<br />
[[3a5c]], [[3a5d]] - TtATPS subunit A,B,D,F<br />
**[[3a5c]], [[3a5d]] - TtATPS subunit A,B,D,F<br />
[[3gqb]] - TtATPS subunit A (mutant),B (mutant)<br />  
**[[3gqb]] - TtATPS subunit A (mutant),B (mutant)<br />  
[[3k5b]] - TtATPS subunit E (mutant)+C<br />
**[[3k5b]] - TtATPS subunit E (mutant)+C<br />
===P-ATPase===


''Cu transporting ATPase''
*'''P-ATPase'''


[[2kmv]], [[2kmx]], [[2arf]] – hATPase NBD – human – NMR<br />
*''Cu transporting ATPase''
[[2kij]] - hATPase actuator domain – NMR<br />
[[1yjr]], [[1yjt]], [[1yju]], [[1yjv]] - hATPase  (mutant) 6th soluble domain – NMR<br />
[[1y3j]], [[1y3k]] - hATPase  5th soluble domain – NMR<br />
[[1s6o]], [[1s6u]] - hATPase  2nd soluble domain – NMR<br />
[[1q8l]] - hATPase  2nd MBD  – NMR<br />
[[1aw0]], [[2aw0]] - hATPase  4th MBD  – NMR<br />
[[1kvi]], [[1kvj]] - hATPase  1st MBD  – NMR<br />
[[3dxs]] - AtATPase MBD – ''Arabidopsis thaliana''<br />
[[3voy]] - AfATPase – Archaeoglobus fulgidus – CryoEM<br />
[[3skx]], [[3sky]] - AfATPase NBD<br />
[[2k1r]] - hATPase MBD+ ATOX1 – NMR<br />
[[2rop]], [[2g9o]], [[2ga7]] - hATPase MBD – NMR<br />
[[2rml]] - BsATPase N-terminal – ''Bacillus subtilis'' – NMR<br />
[[2gcf]] - sATPase N-terminal - Synechocystis – NMR<br />
[[4a48]] - sATPase<br />
[[2iye]] - SsATPase catalytic domain – ''Sulfolobus solfataricus''<br />
[[2yj3]] - SsATPase catalytic domain (mutant)<br />
[[2yj4]], [[2yj5]], [[2yj6]] - SsATPase catalytic domain (mutant) + nucleotide<br />
[[1fvq]], [[1fvs]] - hATPase – NMR<br />
[[3cjk]] – hATPase + Cu transporting protein ATX1<br />
[[3rfu]] – ATPase – ''Legionella pneumophila''<br />
[[4f2f]] - ATPase metal-binding domain – ''Streptococcus pneumonia''<br />
[[3j08]], [[3j09]] - AfATPase<br />
[[3a1c]] – AfATPase + AMPPCP<br />
[[3a1d]] - AfATPase + ADP-Mg<br / >
[[3a1e]] - AfATPase (mutant) + AMPPCP<br />


''Na/K transporting ATPase''
**[[2kmv]], [[2kmx]], [[2arf]] – hATPase NBD – human – NMR<br />
**[[2kij]] - hATPase actuator domain – NMR<br />
**[[1yjr]], [[1yjt]], [[1yju]], [[1yjv]] - hATPase  (mutant) 6th soluble domain – NMR<br />
**[[1y3j]], [[1y3k]] - hATPase  5th soluble domain – NMR<br />
**[[1s6o]], [[1s6u]] - hATPase  2nd soluble domain – NMR<br />
**[[1q8l]] - hATPase  2nd MBD  – NMR<br />
**[[1aw0]], [[2aw0]] - hATPase  4th MBD  – NMR<br />
**[[1kvi]], [[1kvj]] - hATPase  1st MBD  – NMR<br />
**[[3dxs]] - AtATPase MBD – ''Arabidopsis thaliana''<br />
**[[3voy]] - AfATPase – Archaeoglobus fulgidus – CryoEM<br />
**[[3skx]], [[3sky]] - AfATPase NBD<br />
**[[2k1r]] - hATPase MBD+ ATOX1 – NMR<br />
**[[2rop]], [[2g9o]], [[2ga7]] - hATPase MBD – NMR<br />
**[[2rml]] - BsATPase N-terminal – ''Bacillus subtilis'' – NMR<br />
**[[2gcf]] - sATPase N-terminal - ''Synechocystis'' – NMR<br />
**[[4a48]] - sATPase<br />
**[[2iye]] - SsATPase catalytic domain – ''Sulfolobus solfataricus''<br />
**[[2yj3]] - SsATPase catalytic domain (mutant)<br />
**[[2yj4]], [[2yj5]], [[2yj6]] - SsATPase catalytic domain (mutant) + nucleotide<br />
**[[1fvq]], [[1fvs]] - hATPase – NMR<br />
**[[3cjk]] – hATPase + Cu transporting protein ATX1<br />
**[[3rfu]] – ATPase – ''Legionella pneumophila''<br />
**[[4f2f]] - ATPase metal-binding domain – ''Streptococcus pneumonia''<br />
**[[3j08]], [[3j09]] - AfATPase<br />
**[[3a1c]] – AfATPase + AMPPCP<br />
**[[3a1d]] - AfATPase + ADP-Mg<br / >
**[[3a1e]] - AfATPase (mutant) + AMPPCP<br />


[[3a3y]] - SaATPase+K+ouabain – ''Squalus acanthias''<br />
*''Na/K transporting ATPase''
[[3kdp]], [[3b8e]] – pATPase  – pig <br />
[[3n23]] – pATPase + ouabain<br />
[[3b8e]] - pATPase a+BeF3 <br />
[[2hc8]] –AfATPase CopA A domain<br />
[[2b8e]] - AfATPase CopA NBD<br />
[[2xze]] - SaATPase<br />
[[1mo8]], [[1mo7]] - ATPase α-1 – rat<br />
[[1q3i]] - pATPase NBD<br />
[[3n2f]] - pATPase subunits α,β,γ<br />
[[2zxe]] - ATPase subunits α,β + phospholemman-like protein – spiny dogfish


''Ca+2 transporting ATPase''
**[[3a3y]] - SaATPase+K+ouabain – ''Squalus acanthias''<br />
**[[3kdp]], [[3b8e]] – pATPase  – pig <br />
**[[3n23]] – pATPase + ouabain<br />
**[[3b8e]] - pATPase a+BeF3 <br />
**[[2hc8]] –AfATPase CopA A domain<br />
**[[2b8e]] - AfATPase CopA NBD<br />
**[[2xze]] - SaATPase<br />
**[[1mo8]], [[1mo7]] - ATPase α-1 – rat<br />
**[[1q3i]] - pATPase NBD<br />
**[[3n2f]] - pATPase subunits α,β,γ<br />
**[[2zxe]] - ATPase subunits α,β + phospholemman-like protein – spiny dogfish


[[3fgo]] - rATPase+CPA+AMPPCP – rabbit<br />
*''Ca+2 transporting ATPase''
[[3b9r]], [[1xp5]] - rATPase+AlF4<br />
[[1wpg]] - rATPase+MgF4<br />
[[3w5b]] - rATPase+Mg<br />
[[3w5c]], [[3w5d]], [[1iwo]] - rATPase<br />
[[2zbe]], [[3b9b]] – rATPase+BeF3<br />
[[2zbf]] - rATPase+BeF3+TG<br />
[[2zbg]] - rATPase+AlF4+TG<br />
[[2zbd]], [[3ar8]] - rATPase+AlF4+nucleotide+Ca<br />
[[3ar9]] - rATPase+BeF3+nucleotide<br />
[[2dqs]], [[3ar2]], [[1vfp]]  - rATPase+AMPPCP<br />
[[2c88]], [[2c8k]], [[3ar4]], [[3ar3]], [[3ar5]], [[3ar7]] - rATPase+nucleotide+TG<br />
[[2ear]], [[2c8l]] - rATPase+TG<br />
[[2agv]] - rATPase+TG+BHQ<br />
[[2eas]] - rATPase+CPA<br />
[[2eat]] - rATPase+CPA+GT<br />
[[3ar6]] - rATPase+TNP-ADP+GT<br />
[[2eau]] - rATPase+CPA+curcumin<br />
[[3ba6]] - rATPase phosphoenzyme intermediate<br />
[[3fpb]] - rATPase+ATP+cyclopiazonic acid<br />
[[3fps]], [[2oa0]] - rATPase+ADP+cyclopiazonic acid<br />
[[2o9j]] - rATPase+MgF4+cyclopiazonic acid<br />
[[1kju]], [[3n5k]] - rATPase E2 state<br />
[[2c9m]] - rATPase Ca2E1 state<br />
[[1t5s]], [[3n8g]] - rATPase Ca2E1 state+AMPPCP<br />
[[1t5t]] - rATPase Ca2E1 state+ADP+AlF4<br />
[[1su4]] - rATPase +2Ca2<br />
[[2by4]], [[2yfy]], [[3nal]], [[3nam]], [[3nan]] - rATPase HNE2 state+thapsigargin derivative


''Zn+2 transporting ATPase''
**[[3fgo]] - rATPase+CPA+AMPPCP – rabbit<br />
**[[3b9r]], [[1xp5]] - rATPase+AlF4<br />
**[[1wpg]] - rATPase+MgF4<br />
**[[3w5b]] - rATPase+Mg<br />
**[[3w5c]], [[3w5d]], [[1iwo]] - rATPase<br />
**[[2zbe]], [[3b9b]] – rATPase+BeF3<br />
**[[2zbf]] - rATPase+BeF3+TG<br />
**[[2zbg]] - rATPase+AlF4+TG<br />
**[[2zbd]], [[3ar8]] - rATPase+AlF4+nucleotide+Ca<br />
**[[3ar9]] - rATPase+BeF3+nucleotide<br />
**[[2dqs]], [[3ar2]], [[1vfp]]  - rATPase+AMPPCP<br />
**[[2c88]], [[2c8k]], [[3ar4]], [[3ar3]], [[3ar5]], [[3ar7]] - rATPase+nucleotide+TG<br />
**[[2ear]], [[2c8l]] - rATPase+TG<br />
**[[2agv]] - rATPase+TG+BHQ<br />
**[[2eas]] - rATPase+CPA<br />
**[[2eat]] - rATPase+CPA+GT<br />
**[[3ar6]] - rATPase+TNP-ADP+GT<br />
**[[2eau]] - rATPase+CPA+curcumin<br />
**[[3ba6]] - rATPase phosphoenzyme intermediate<br />
**[[3fpb]] - rATPase+ATP+cyclopiazonic acid<br />
**[[3fps]], [[2oa0]] - rATPase+ADP+cyclopiazonic acid<br />
**[[2o9j]] - rATPase+MgF4+cyclopiazonic acid<br />
**[[1kju]], [[3n5k]] - rATPase E2 state<br />
**[[2c9m]] - rATPase Ca2E1 state<br />
**[[1t5s]], [[3n8g]] - rATPase Ca2E1 state+AMPPCP<br />
**[[1t5t]] - rATPase Ca2E1 state+ADP+AlF4<br />
**[[1su4]] - rATPase +2Ca2<br />
**[[2by4]], [[2yfy]], [[3nal]], [[3nam]], [[3nan]] - rATPase HNE2 state+thapsigargin derivative


[[2ofg]], [[2ofh]] - sATPase N-terminal – NMR
*''Zn+2 transporting ATPase''


''K+ transporting ATPase''
**[[2ofg]], [[2ofh]] - sATPase N-terminal – NMR


[[2a00]], [[2a29]] - EcATPase NBD of KdpB+AMPPNP– ''Escherichia coli'' – NMR<br />
*''K+ transporting ATPase''
[[1svj]], [[1u7q]] - EcATPase NBD of KdpB – NMR<br />
[[2ynr]] – pATPase – Cryo EM


''As+ transporting ATPase''
**[[2a00]], [[2a29]] - EcATPase NBD of KdpB+AMPPNP– ''Escherichia coli'' – NMR<br />
**[[1svj]], [[1u7q]] - EcATPase NBD of KdpB – NMR<br />
**[[2ynr]] – pATPase – Cryo EM


[[1ii0]], [[1f48]] - EcATPase<br />
*''As+ transporting ATPase''
[[1ihu]] – EcATPase+Mg+ADP+AlF3<br />
[[1ii9]] - EcATPase<br />
[[3h84]], [[3idq]],  [[3a36]], [[3a37]] - yATPase GET3 – yeast<br />
[[3sja]], [[3sjb]], [[3sjc]], [[3sjd]], [[3zs8]], [[3zs9]], [[3b2e]], [[3vlc]] - yATPase GET3 + GET1 cystolic domain<br />
[[3ibg]] - ATPase GET3 – ''Aspergillus fumigatus''


''H+ transporting ATPase''
**[[1ii0]], [[1f48]] - EcATPase<br />
**[[1ihu]] – EcATPase+Mg+ADP+AlF3<br />
**[[1ii9]] - EcATPase<br />
**[[3h84]], [[3idq]],  [[3a36]], [[3a37]] - yATPase GET3 – yeast<br />
**[[3sja]], [[3sjb]], [[3sjc]], [[3sjd]], [[3zs8]], [[3zs9]], [[3b2e]], [[3vlc]] - yATPase GET3 + GET1 cystolic domain<br />
**[[3ibg]] - ATPase GET3 – ''Aspergillus fumigatus''


[[3b8c]]  - AtATPase C terminal truncated<br />
*''H+ transporting ATPase''
[[1mhs]] - ATPase – ''Neurospora crassa''<br />


''Na+ transporting ATPase''
**[[3b8c]]  - AtATPase C terminal truncated<br />
**[[1mhs]] - ATPase – ''Neurospora crassa''<br />


[[2db4]], [[3aou]] - EhATPase subunit K – ''Enterococcus hirae''<br />
*''Na+ transporting ATPase''
[[3aon]] - EhATPase subunits D,G<br />
[[3vr2]] - EhATPase subunits A,B<br />
[[3vr4]], [[3vr5]] - EhATPase subunits A,B,D,G<br />
[[3vr3]] - EhATPase subunits A,B + AMPPNP<br />
[[3vr6]] - EhATPase subunits A,B,D,G + AMPPNP<br />
[[1yce]] - ATPase rotor ring – ''Ilyobacter tartaricus''


''H/K transporting ATPase''
**[[2db4]], [[3aou]] - EhATPase subunit K – ''Enterococcus hirae''<br />
**[[3aon]] - EhATPase subunits D,G<br />
**[[3vr2]] - EhATPase subunits A,B<br />
**[[3vr4]], [[3vr5]] - EhATPase subunits A,B,D,G<br />
**[[3vr3]] - EhATPase subunits A,B + AMPPNP<br />
**[[3vr6]] - EhATPase subunits A,B,D,G + AMPPNP<br />
**[[1yce]] - ATPase rotor ring – ''Ilyobacter tartaricus''


[[1iwc]], [[1iwf]] - pATPase NBD <br />
*''H/K transporting ATPase''
[[3ixz]] - pATPase a+AlF4<br />
[[2xzb]] – pATPase subunits α, β<br />


''Mg+2 transporting ATPase''
**[[1iwc]], [[1iwf]] - pATPase NBD <br />
**[[3ixz]] - pATPase a+AlF4<br />
**[[2xzb]] – pATPase subunits α, β<br />


[[3gwi]] – EcATPase P-1 NBD
*''Mg+2 transporting ATPase''


''Arg/ornithine transporting ATPase''
**[[3gwi]] – EcATPase P-1 NBD


[[3md0]] – MtATPase+GDP – ''Mycobacterium tuberculosis''<br />
*''Arg/ornithine transporting ATPase''
[[1kmh]] - ATPase alpha subunit+tentoxin – spinach<br />
[[1h8e]] – cATPase+ADP+AlF4+ADP+SO4 - cow<br />
[[1h8h]] - cATPase+ AMPPNP<br />
[[1efr]] - cATPase+efrapeptin<br />
[[3fks]] – ATPase – yeast<br />
[[3ea0]] – ATPase ParA, fragment – ''Chlorobium tepidum''<br />
[[2qen]] – ATPase (mutant) Walker-type – ''Pyrococcus abyssi''<br />
[[3cf0]], [[3cf1]], [[3cf3]] – mATPase  NBD+ADP – mouse<br />
[[3cf2]] - mATPase NBD+ADP+AMP-PNP<br />
[[2r31]], [[2p4x]] – PdATPase ATP12 – ''Paracoccus denitrificans''<br />
[[2zd2]] – PdATPase (mutant) ATP12<br />
[[1d8s]] – EcATPase F1<br />
[[1vdz]] – PhATPase subunit A – ''Pyrococcus horikoshii''<br />


===RNA-dependent ATPase===
**[[3md0]] – MtATPase+GDP – ''Mycobacterium tuberculosis''<br />
**[[1kmh]] - ATPase alpha subunit+tentoxin – spinach<br />
**[[1h8e]] – cATPase+ADP+AlF4+ADP+SO4 - cow<br />
**[[1h8h]] - cATPase+ AMPPNP<br />
**[[1efr]] - cATPase+efrapeptin<br />
**[[3fks]] – ATPase – yeast<br />
**[[3ea0]] – ATPase ParA, fragment – ''Chlorobium tepidum''<br />
**[[2qen]] – ATPase (mutant) Walker-type – ''Pyrococcus abyssi''<br />
**[[3cf0]], [[3cf1]], [[3cf3]] – mATPase  NBD+ADP – mouse<br />
**[[3cf2]] - mATPase NBD+ADP+AMP-PNP<br />
**[[2r31]], [[2p4x]] – PdATPase ATP12 – ''Paracoccus denitrificans''<br />
**[[2zd2]] – PdATPase (mutant) ATP12<br />
**[[1d8s]] – EcATPase F1<br />
**[[1vdz]] – PhATPase subunit A – ''Pyrococcus horikoshii''<br />


[[3eaq]], [[3i31]], [[3i32]] – TtATPase fragment<br />
*'''RNA-dependent ATPase'''
[[3mwj]] – TtATPase N-terminal (mutant)<br />
[[3mwk]], [[3nbf]] – TtATPase N-terminal + 8-oxo-AMP<br />
[[3mwl]] - TtATPase N-terminal (mutant) + 8-oxoadenine<br />
[[3nej]] - TtATPase reca-like domain (mutant)


===Proteasome-associated ATPase===
**[[3eaq]], [[3i31]], [[3i32]] – TtATPase fragment<br />
**[[3mwj]] – TtATPase N-terminal (mutant)<br />
**[[3mwk]], [[3nbf]] – TtATPase N-terminal + 8-oxo-AMP<br />
**[[3mwl]] - TtATPase N-terminal (mutant) + 8-oxoadenine<br />
**[[3nej]] - TtATPase reca-like domain (mutant)


[[3fp9]], [[3m9b]], [[3m9h]] – MtATPase intern domain<br />
*'''Proteasome-associated ATPase'''
[[3m91]], [[3m9d]] - MtATPase coiled coil domain + protein PUP<br />
[[3kw6]] – hATPase 5


===Transitional endoplasmic reticulum ATPase===
**[[3fp9]], [[3m9b]], [[3m9h]] – MtATPase intern domain<br />
**[[3m91]], [[3m9d]] - MtATPase coiled coil domain + protein PUP<br />
**[[3kw6]] – hATPase 5


[[3hu1]], [[3hu2]], [[3hu3]] – hTer-ATPase + ATPGS<br />
*'''Transitional endoplasmic reticulum ATPase'''
[[3qc8]], [[3qq8]], [[3qwz]] - hTer-ATPase N terminal + FAS-associated factor 1<br />
[[3qq7]] - hTer-ATPase N terminal<br />
[[3tiw]] - hTer-ATPase N terminal + E3 ubiquitin-protein ligase peptide


===LAO/AO transport system ATPase===
**[[3hu1]], [[3hu2]], [[3hu3]] – hTer-ATPase + ATPGS<br />
**[[3qc8]], [[3qq8]], [[3qwz]] - hTer-ATPase N terminal + FAS-associated factor 1<br />
**[[3qq7]] - hTer-ATPase N terminal<br />
**[[3tiw]] - hTer-ATPase N terminal + E3 ubiquitin-protein ligase peptide


[[3nxs]] – ATPase – ''Mycobacterium smegmatis''
*'''LAO/AO transport system ATPase'''


===DNA double-strand repair ATPase (Rad50)===
**[[3nxs]] – ATPase – ''Mycobacterium smegmatis''


[[3aux]] – MjRad50 – ''Methanocaldococcus jannaschii''<br />
*'''DNA double-strand repair ATPase (Rad50)'''
[[3auy]] - MjRad50 + ADP<br />
[[3av0]] - MjRad50 + ATP<br />
[[3qg5]] – Rad50 NBD + MRE11 – ''Thermotoga maritima''<br />
[[3qkr]], [[3qks]], [[3qf7]] - PfRad50 NBD + MRE11 – ''Pyrococcus furiosus''<br />
[[3qkt]] - PfRad50 NBD + AMPPNP<br />
[[3qku]] - PfRad50 NBD + AMPPNP + MRE11


===MipZ ATPase===
**[[3aux]] – MjRad50 – ''Methanocaldococcus jannaschii''<br />
**[[3auy]] - MjRad50 + ADP<br />
**[[3av0]] - MjRad50 + ATP<br />
**[[3qg5]] – Rad50 NBD + MRE11 – ''Thermotoga maritima''<br />
**[[3qkr]], [[3qks]], [[3qf7]] - PfRad50 NBD + MRE11 – ''Pyrococcus furiosus''<br />
**[[3qkt]] - PfRad50 NBD + AMPPNP<br />
**[[3qku]] - PfRad50 NBD + AMPPNP + MRE11


[[2xit]], [[2xj4]] – CcMipZ – ''Caulobacter crescentus''<br />
*'''MipZ ATPase'''
[[2xj9]] – CcMipZ (mutant)


**[[2xit]], [[2xj4]] – CcMipZ – ''Caulobacter crescentus''<br />
**[[2xj9]] – CcMipZ (mutant)


[[3nbx]] – EcATPase Rava + ADP


===FlaI ATPase===
**[[3nbx]] – EcATPase Rava + ADP


[[4ihq]], [[4ii7]] – ATPase (mutant) – ''Sulfolobus acidocaldarius''<br />
*'''FlaI ATPase'''


**[[4ihq]], [[4ii7]] – ATPase (mutant) – ''Sulfolobus acidocaldarius''<br />
}}
==References==
==References==
<references/>
<references/>


[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 09:34, 18 November 2014

Human RuvB-like 1 dodecamer complex with ADP (PDB code 2c9o)

Drag the structure with the mouse to rotate

3D Structures of ATPase

Updated on 18-November-2014

mutant)

  • V-ATPase subunit B
    • 2c61 - MmATPS subunit B – Methanosarcina mazei
    • 2rkw, 3b2q, 3ssa, 3tgw, 3tiv - MmATPS subunit B (mutant)
    • 3dsr - MmATPS subunit B+ADP
    • 3eiu - MmATPS subunit B+ATP
  • V-ATPase subunit C
    • 1u7l, 3u2f, 3u2y, 3u32, 3ud0 - yATPS subunit C
    • 3v3c - ATPS subunit C - pea
    • 1ijp, 1l6t – EcF1-ATPS subunit C (mutant) – Escherichia coli - NMR
    • 1r5z, 1v9m - TtATPS subunit C – Thermus thermophilus
    • 3lg8 - MtATPS subunit C C-terminal
    • 2w5j - sATPS subunit C - spinach
    • 2wie, 2xqs, 2xqt, 2xqu - ATPS subunit C – Arthrospira platensis
    • 3zk1, 3zk2 - ATPS subunit C – Fusobacterium nucleatum
  • V-ATPase subunit E
    • 2kz9 – yATPase subunit E
    • 2dm9, 2dma, 4dt0 - PhATPS subunit E – Pyrococcus horikoshii
    • 2kk7 - MjATPS subunit E – Methanocaldococcus jannaschii
    • 3v6i – TtATPS subunit E + VAPC
  • V-ATPase subunit F
    • 2qai - ATPS subunit F – Pyrococcus furiosus
    • 2i4r - ATPS subunit F – Archaeoglobus fulgidus
    • 2ov6 - MmATPS subunit F - NMR
    • 2d00 - TtATPS subunit F
    • 4ix9 – yATP subunit F (mutant)
  • V-ATPase subunit G
    • 2k88 - yATPS subunit G - NMR
  • V-ATPase subunit H
    • 1ho8 – yATPS subunit H – yeast
  • V-ATPase subunit K
    • 2bl2, 2cyd - ATPS subunit K – Enterococcus hirae
  • V-ATPase subunit I
    • 3rrk – ATPS subunit I N terminal – Meiothermus ruber
    • 4dl0, 4efa - yATPase subunits C,G,E
    • 3w3a - yATPS subunit A,B,D,F
    • 3a5c, 3a5d - TtATPS subunit A,B,D,F
    • 3gqb - TtATPS subunit A (mutant),B (mutant)
    • 3k5b - TtATPS subunit E (mutant)+C
  • P-ATPase
  • Cu transporting ATPase
    • 2kmv, 2kmx, 2arf – hATPase NBD – human – NMR
    • 2kij - hATPase actuator domain – NMR
    • 1yjr, 1yjt, 1yju, 1yjv - hATPase (mutant) 6th soluble domain – NMR
    • 1y3j, 1y3k - hATPase 5th soluble domain – NMR
    • 1s6o, 1s6u - hATPase 2nd soluble domain – NMR
    • 1q8l - hATPase 2nd MBD – NMR
    • 1aw0, 2aw0 - hATPase 4th MBD – NMR
    • 1kvi, 1kvj - hATPase 1st MBD – NMR
    • 3dxs - AtATPase MBD – Arabidopsis thaliana
    • 3voy - AfATPase – Archaeoglobus fulgidus – CryoEM
    • 3skx, 3sky - AfATPase NBD
    • 2k1r - hATPase MBD+ ATOX1 – NMR
    • 2rop, 2g9o, 2ga7 - hATPase MBD – NMR
    • 2rml - BsATPase N-terminal – Bacillus subtilis – NMR
    • 2gcf - sATPase N-terminal - Synechocystis – NMR
    • 4a48 - sATPase
    • 2iye - SsATPase catalytic domain – Sulfolobus solfataricus
    • 2yj3 - SsATPase catalytic domain (mutant)
    • 2yj4, 2yj5, 2yj6 - SsATPase catalytic domain (mutant) + nucleotide
    • 1fvq, 1fvs - hATPase – NMR
    • 3cjk – hATPase + Cu transporting protein ATX1
    • 3rfu – ATPase – Legionella pneumophila
    • 4f2f - ATPase metal-binding domain – Streptococcus pneumonia
    • 3j08, 3j09 - AfATPase
    • 3a1c – AfATPase + AMPPCP
    • 3a1d - AfATPase + ADP-Mg
    • 3a1e - AfATPase (mutant) + AMPPCP
  • Na/K transporting ATPase
    • 3a3y - SaATPase+K+ouabain – Squalus acanthias
    • 3kdp, 3b8e – pATPase – pig
    • 3n23 – pATPase + ouabain
    • 3b8e - pATPase a+BeF3
    • 2hc8 –AfATPase CopA A domain
    • 2b8e - AfATPase CopA NBD
    • 2xze - SaATPase
    • 1mo8, 1mo7 - ATPase α-1 – rat
    • 1q3i - pATPase NBD
    • 3n2f - pATPase subunits α,β,γ
    • 2zxe - ATPase subunits α,β + phospholemman-like protein – spiny dogfish
  • Ca+2 transporting ATPase
  • Zn+2 transporting ATPase
  • K+ transporting ATPase
    • 2a00, 2a29 - EcATPase NBD of KdpB+AMPPNP– Escherichia coli – NMR
    • 1svj, 1u7q - EcATPase NBD of KdpB – NMR
    • 2ynr – pATPase – Cryo EM
  • As+ transporting ATPase
  • H+ transporting ATPase
    • 3b8c - AtATPase C terminal truncated
    • 1mhs - ATPase – Neurospora crassa
  • Na+ transporting ATPase
    • 2db4, 3aou - EhATPase subunit K – Enterococcus hirae
    • 3aon - EhATPase subunits D,G
    • 3vr2 - EhATPase subunits A,B
    • 3vr4, 3vr5 - EhATPase subunits A,B,D,G
    • 3vr3 - EhATPase subunits A,B + AMPPNP
    • 3vr6 - EhATPase subunits A,B,D,G + AMPPNP
    • 1yce - ATPase rotor ring – Ilyobacter tartaricus
  • H/K transporting ATPase
  • Mg+2 transporting ATPase
    • 3gwi – EcATPase P-1 NBD
  • Arg/ornithine transporting ATPase
    • 3md0 – MtATPase+GDP – Mycobacterium tuberculosis
    • 1kmh - ATPase alpha subunit+tentoxin – spinach
    • 1h8e – cATPase+ADP+AlF4+ADP+SO4 - cow
    • 1h8h - cATPase+ AMPPNP
    • 1efr - cATPase+efrapeptin
    • 3fks – ATPase – yeast
    • 3ea0 – ATPase ParA, fragment – Chlorobium tepidum
    • 2qen – ATPase (mutant) Walker-type – Pyrococcus abyssi
    • 3cf0, 3cf1, 3cf3 – mATPase NBD+ADP – mouse
    • 3cf2 - mATPase NBD+ADP+AMP-PNP
    • 2r31, 2p4x – PdATPase ATP12 – Paracoccus denitrificans
    • 2zd2 – PdATPase (mutant) ATP12
    • 1d8s – EcATPase F1
    • 1vdz – PhATPase subunit A – Pyrococcus horikoshii
  • RNA-dependent ATPase
    • 3eaq, 3i31, 3i32 – TtATPase fragment
    • 3mwj – TtATPase N-terminal (mutant)
    • 3mwk, 3nbf – TtATPase N-terminal + 8-oxo-AMP
    • 3mwl - TtATPase N-terminal (mutant) + 8-oxoadenine
    • 3nej - TtATPase reca-like domain (mutant)
  • Proteasome-associated ATPase
  • Transitional endoplasmic reticulum ATPase
    • 3hu1, 3hu2, 3hu3 – hTer-ATPase + ATPGS
    • 3qc8, 3qq8, 3qwz - hTer-ATPase N terminal + FAS-associated factor 1
    • 3qq7 - hTer-ATPase N terminal
    • 3tiw - hTer-ATPase N terminal + E3 ubiquitin-protein ligase peptide
  • LAO/AO transport system ATPase
    • 3nxs – ATPase – Mycobacterium smegmatis
  • DNA double-strand repair ATPase (Rad50)
    • 3aux – MjRad50 – Methanocaldococcus jannaschii
    • 3auy - MjRad50 + ADP
    • 3av0 - MjRad50 + ATP
    • 3qg5 – Rad50 NBD + MRE11 – Thermotoga maritima
    • 3qkr, 3qks, 3qf7 - PfRad50 NBD + MRE11 – Pyrococcus furiosus
    • 3qkt - PfRad50 NBD + AMPPNP
    • 3qku - PfRad50 NBD + AMPPNP + MRE11
  • MipZ ATPase
    • 2xit, 2xj4 – CcMipZ – Caulobacter crescentus
    • 2xj9 – CcMipZ (mutant)
    • 3nbx – EcATPase Rava + ADP
  • FlaI ATPase
    • 4ihq, 4ii7 – ATPase (mutant) – Sulfolobus acidocaldarius

References

Retrieved from "https://proteopedia.org/index.php?title=ATPase&oldid=2060438"