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| Line 39: |
Line 39: |
| **[[1k6w]] – EcCDDA <BR /> | | **[[1k6w]] – EcCDDA <BR /> |
| **[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]] – EcCDDA (mutant)<BR /> | | **[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]] – EcCDDA (mutant)<BR /> |
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| *''Cytosine deaminase complex'' | | *''Cytosine deaminase complex'' |
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| Line 90: |
Line 91: |
| **[[7dm6]] – AtGSDA + Zn + crotonoside<br /> | | **[[7dm6]] – AtGSDA + Zn + crotonoside<br /> |
| **[[7dcw]] – AtGSDA + Zn + adeosine<br /> | | **[[7dcw]] – AtGSDA + Zn + adeosine<br /> |
| **[[7dgc]], [[7dh1]], [[7dlc]], [[7dm5]], [[7dox]], [[7dow]], [[7doy}}, [[7dpk]] – AtGSDA + Zn + guanosine derivative<br /> | | **[[7dgc]], [[7dh1]], [[7dlc]], [[7dm5]], [[7dox]], [[7dow]], [[7doy]], [[7dpk]] – AtGSDA + Zn + guanosine derivative<br /> |
| **[[7dqn]], [[7w1q]] – AtGSDA (mutant) + Zn + guanosine derivative<br /> | | **[[7dqn]], [[7w1q]] – AtGSDA (mutant) + Zn + guanosine derivative<br /> |
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3D Structures of deaminase
Updated on 18-December-2022
{"openlevels":0}
- Cytidine deaminase
- 6l08 – CDA1 – Arabidopsis thaliana
- 1r5t – yCDA - yeast
- 2a8n – AtCDA – Agrobacterium tumefaciens
- 2g84 – NeCDA – Nitrosomonas europaea
- 2d30 – CDA – Bacillus anthracis
- 3dmo – CDA – Burkholderia pseudomallei
- 3ijf – MtCDA – Mycobacterium tuberculosis
- 4wif, 4wig – MtCDA (mutant)
- 3mpz – CDA – Mycobacterium smegmatis
- 3r2n – CDA – Mycobacterium leprae
- 4f3w – CDA – Mycobacterium marinum
- 6kw6 – CDA – Streptomyces noursei
- Cytidine deaminase complex with nucleoside
- 1mq0 – hCDA + β-ribofuranosyl diazepinone - human
- 1zab – mCDA + deazauridine - mouse
- 2fr5 – mCDA + tetrahydrouridine
- 2fr6 – mCDA + cytidine + uridine
- 1ctt – EcCDA + dihydro-pyrimidinone – Escherichia coli
- 1ctu – EcCDA + hydroxyl-dihydro-zebularine
- 1af2 – EcCDA + uridine
- 1aln – EcCDA + deazacytidine
- 1jtk – BsCDA + tetrahydrodeoxyuridine - Bacillus subtilis
- 1uwz, 1ux0, 1ux1 – BsCDA (mutant) + tetrahydrodeoxyuridine
- 4eg2 – CDA + uridine - Vibrio cholerae
- Cytosine deaminase
- Cytosine deaminase complex
- 1ox7 – yCDDA + Zn
- 1p6o – yCDDA + pyrimidine derivative
- 2o3k – yCDDA (mutant) + pyrimidine derivative
- 3r0d – EcCDDA + Zn
- 3rn6 – EcCDDA + Zn + iso-guanine
- 1k70 – EcCDDA + pyrimidine derivative
- 1rak – EcCDDA (mutant) + pyrimidine derivative
- 3o7u – EcCDDA + Zn + phosphono-cytosine
- 6k63 – KpCDDA + Zn – Klebsiella pneumoniae
- 4r7w, 4r85, 4r88 – KpCDDA + cytosine derivative
- Deoxycytidylate deaminase
- 2w4l – hDCMP
- 5jfy – DCMP - cabbage
- 2hvv, 2hvw – SmDCMP - Streptococcus mutans
- 1vq2 – DCMP - Enterobacteria phage T4
- 4p9c – CyDCMP + deoxyCMP - Cyanophage S-TIM5
- 4p9d – CyDCMP + TMP
- 4p9e – CyDCMP
- Guanine deaminase
- Guanine deaminase complex with nucleoside
- 2uz9 – hGDA + xanthine
- 4aql – hGDA + valacyclovir
- 2i9u – GDA + guanine – Clostridium acetobutylicum
- 2ood – GDA + guanine – Bradrhizobium japonicum
- 4lc5, 4lcn, 4hrq, 7c3t, 7c3u – NeGDA + guanine derivative
- 4hrw – NeGDA (mutant) + guanine derivative
- 4lco – NeGDA + ameline
- 4lcp – NeGDA + diaminopurine
- 4ld2 – NeGDA + cytidine
- 4ld4 – NeGDA + cytosine
- Guanosine deaminase
- Adenine deaminase
- Adenosine deaminase See Adenosine deaminase
- Glucosamine 6-phosphate deaminase
- 1dea, 1cd5, 1fs6, 1fsf – EcGPD
- 1jt9 – EcGPD (mutant)
- 1hor – EcGPD + deoxy-amino glucitol-phosphate
- 1hot, 1frz, 1fs5, 2wu1 – EcGPD + N-acetyl-glucosamine-6-phosphate
- 1fqo – EcGPD + fructose 6-phosphate
- 2ri0 – SmGPD – Streptococcus mutans
- 2ri1 – SmGPD + glucosamine-6-phosphate
- 6nbg – KpGPD
- 3hn6 – GPD – Borrelia burgdorferi
- 1j5x – GPD – Thermotoga maritima
- 2bkv – BsGPD
- 2bkx – BsGPD + fructose 6-phosphate
- 4r7t – VcGPD
- 5hj5 – VcGPD + fructose 6-phosphate + glucose-6-phosphate
- 7lqm – GPD – Pasteurelia multocida
- 7lqn – GPD – Haemophilus influenzae
- 1-aminocyclopropane-1-carboxylate (ACC) deaminase
- 1f2d – WsACCD + PLP – Williopsis saturnus
- 1j0c – WsACCD (mutant) + PLP
- 1j0d – WsACCD (mutant) + inhibitor
- 1j0e – WsACCD (mutant) + PLP + ACC
- 1j0a – PhACCD + PLP + 2-propanol – Pyrococcus horikoshii
- 1j0b – PhACCD + inhibitor
- 1tyz – PsACCD + PLP - Pseudomonas
- 1rqx – PsACCD + PLP + inhibitor
- 1tz2 – PsACCD + PLP + ACC
- 1tzj – PsACCD + PLP + vinylglycine
- 1tzk – PsACCD + PLP + α-ketobutyrate
- 1tzm – PsACCD + PLP + chloroalanine
- dCTP deaminase
- 2qlp – MtCTPD
- 3km3 – CTPD – Anaplasma phagocytophilum
- 4dhk – CTPD - Burkholderia thailandensis
- dCTP deaminase complex
- 1xs1 – EcCTPD + dUTP
- 1xs4 – EcCTPD (mutant) + dCTP
- 2j4h – EcCTPD (mutant) + dCDP
- 1xs6, 2v9x – EcCTPD (mutant) + dUTP
- 2j4q – EcCTPD (mutant) + dTTP + dTDP
- 2qxx – MtCTPD + dTTP
- dCTP deaminase-dUTPase
- 2hxb, 1ogh, 1pkh, 3gf0 – MjDCD-DUT – Methanocaldococcus jannaschii
- 1pkj – MjDCD-DUT + dUTP
- 2hxd – MjDCD-DUT (mutant) + dUTP derivative
- 1pkk – MjDCD-DUT + dCTP
- 4xjc – DCD-DUT + TTP – Bacillus halodurans
- 4a6a – MtDCD-DUT (mutant) + TTP
- Porphobilinogen deaminase See Porphobilinogen Deaminase
- Blasticidin-S deaminase
- 1wn5, 2z3g – AtBSD – Aspergillus terreus
- 2z3j – AtBSD (mutant)
- 1wn6 – AtBSD + blasticidin-S intermediate
- 2z3h – AtBSD + deaminohydroxy blasticidin-S
- 2z3i – AtBSD (mutant) + blasticidin-S
- 3oj6 – BSD – Coccidioides immitis
- Threonine deaminase
- 3iau – THD + PLP derivative – tomato
- 1tdj – EcTHD + PLP
- 2gn0, 2gn1 – StTHD + PLP derivative – Salmonella typhimurium
- 2gn2 – StTHD + PLP derivative + CMP
- 1ve5 – THD + PLP – Thermus thermophilus
- L-serine deaminase
- D-serine deaminase
- 3r0x, 3r0z – DSD – Salmonella enterica
- 3ss7, 3ss9 – EcDSD + PLP
- 3gwq – DSD - Burkholderia xenovorans
- L-amino acid deaminase
- 5fjm – PmLSD – Proteus myxofaciens
- 5fjn – PmLSD + anthranilate
- 5i39, 5hxw – LSD + FAD – Proteus vulgaris
- 2-aminomuconate deaminase
- Aminofutalosine deaminase
- 7lkj – HpAMD – Helicobacter pylori
- 7lkk – HpAMD + inhibitor
