9cbe: Difference between revisions
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==Structure of a type III antifreeze protein isoform HPLC12 re-refined using standard protocols== | |||
<StructureSection load='9cbe' size='340' side='right'caption='[[9cbe]], [[Resolution|resolution]] 1.90Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[9cbe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Zoarces_americanus Zoarces americanus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9CBE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9CBE FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9cbe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9cbe OCA], [https://pdbe.org/9cbe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9cbe RCSB], [https://www.ebi.ac.uk/pdbsum/9cbe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9cbe ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/ANP12_ZOAAM ANP12_ZOAAM] Contributes to protect fish blood from freezing at subzero sea water temperatures. Lowers the blood freezing point. Binds to nascent ice crystals and prevents further growth. | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
The manuscript ;Modeling a unit cell: crystallographic refinement procedure using the biomolecular MD simulation platform Amber' presents a novel protein structure refinement method claimed to offer improvements over traditional techniques like Refmac5 and Phenix. Our re-evaluation suggests that while the new method provides improvements, traditional methods achieve comparable results with less computational effort. | |||
In some cases more complicated approaches to refinement of macromolecular structures are not necessary.,Dauter Z, Wlodawer A IUCrJ. 2024 Jul 1;11(Pt 4):643-644. doi: 10.1107/S2052252524005803. PMID:38958017<ref>PMID:38958017</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: Dauter | <div class="pdbe-citations 9cbe" style="background-color:#fffaf0;"></div> | ||
[[Category: Wlodawer | == References == | ||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Zoarces americanus]] | |||
[[Category: Dauter Z]] | |||
[[Category: Wlodawer A]] | |||
Latest revision as of 12:26, 17 July 2024
Structure of a type III antifreeze protein isoform HPLC12 re-refined using standard protocols
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