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| Line 56: |
Line 56: |
| **[[6ay1]] – NDK – ''Helicobacter pylori''<br /> | | **[[6ay1]] – NDK – ''Helicobacter pylori''<br /> |
| **[[6aes]] – NDK – ''Pseudomonas aeruginosa''<br /> | | **[[6aes]] – NDK – ''Pseudomonas aeruginosa''<br /> |
| **[[6agy]] – NDK – ''Aspergillus fumigatus''<br /> | | **[[6agy]], [[6xp4]] – AfNDK – ''Aspergillus fumigatus''<br /> |
| **[[6k3h]], [[6joh]] – NDK – ''Aspergillus flavus''<br /> | | **[[6k3h]], [[6joh]] – NDK – ''Aspergillus flavus''<br /> |
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| Line 79: |
Line 79: |
| **[[4hr2]] - BtNDK + ADP<br /> | | **[[4hr2]] - BtNDK + ADP<br /> |
| **[[5kk8]] - SmNDK + ADP<br /> | | **[[5kk8]] - SmNDK + ADP<br /> |
| | **[[6xp7]] - AfNDK + ADP<br /> |
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| *NDK complex with thymidine derivative | | *NDK complex with thymidine derivative |
| Line 89: |
Line 90: |
| **[[3ddi]] - ApNDK (mutant) + TDP – ''Acanthamoeba polyphaga''<BR /> | | **[[3ddi]] - ApNDK (mutant) + TDP – ''Acanthamoeba polyphaga''<BR /> |
| **[[3em1]], [[3evw]], [[3fbc]], [[3fbf]], [[3g2x]], [[3evo]] - ApNDK (mutant) + TDP derivative<br /> | | **[[3em1]], [[3evw]], [[3fbc]], [[3fbf]], [[3g2x]], [[3evo]] - ApNDK (mutant) + TDP derivative<br /> |
| | **[[6xpv]] - AfNDK + TDP<br /> |
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| *NDK complex with cytosine derivative | | *NDK complex with cytosine derivative |
| Line 100: |
Line 102: |
| **[[3q89]] - SaNDK + CDP<BR /> | | **[[3q89]] - SaNDK + CDP<BR /> |
| **[[4fkx]] - TbNDK + CDP<br /> | | **[[4fkx]] - TbNDK + CDP<br /> |
| | **[[6xpw]] - AfNDK + CDP<br /> |
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| *NDK complex with guanine derivative | | *NDK complex with guanine derivative |
| Line 115: |
Line 118: |
| **[[4fky]] - TbNDK + GTP<br /> | | **[[4fky]] - TbNDK + GTP<br /> |
| **[[1s59]] - AtNDK + GDP derivative + GTP derivative<br /> | | **[[1s59]] - AtNDK + GDP derivative + GTP derivative<br /> |
| | **[[6xps]] - AfNDK + GDP<br /> |
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| *NDK complex with uridine derivative | | *NDK complex with uridine derivative |
| Line 125: |
Line 129: |
| **[[3q8v]] - SaNDK + UDP<BR /> | | **[[3q8v]] - SaNDK + UDP<BR /> |
| **[[4f4a]] - TbNDK + UDP<br /> | | **[[4f4a]] - TbNDK + UDP<br /> |
| | **[[6xpt]] - AfNDK + UDP<br /> |
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| | *NDK complex with inosine derivative |
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| | **[[6xpu]] - AfNDK + IDP<br /> |
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| *NDK other complexes | | *NDK other complexes |
3D structures of nucleoside diphosphate kinase
Updated on 30-November-2021
{"openlevels":0}
- Nucleoside diphosphate kinase
- 1nsk, 1jxv, 3l7u, 4eno - hNDK A – human
- 1ehw - hNDK 4 (mutant)
- 3bbc - hNDK B (mutant)
- 1vya – NDK – maize
- 1w7w - NDK – pea
- 1pku - NDK I – rice
- 3b54 - NDK – yeast
- 1ndk, 1npk, 1s5z – DdNDK – Dictyostelium discoideum
- 1nlk, 1nsp - DdNDK with phosphohistidine intermediate
- 1leo, 1ncl, 1hlw, 1hhq, 1pae, 4c6a - DdNDK (mutant)
- 2nck – MxNDK – Myxococcus xanthus
- 1ndl, 3wx8 – DmNDK – Drosophila melanogaster
- 1nsq - DmNDK with phosphohistidine intermediate
- 1k44, 4anc – MtNDK – Mycobacterium tuberculosis
- 4and, 4ane, 6qa2 - MtNDK (mutant)
- 1nb2 - NDK - Virgibacillus halodenitrificans
- 1xiq - NDK A – Plasmodium falciparum
- 1u8w - AtNDK I – Arabidopsis thaliana
- 1s57 - AtNDK II
- 1wkj - TtNDK – Thermus thermophilus
- 1xqi - NDK (mutant) – Pyrobaculum aerophilum
- 2az1 - HsNDK – Halobacterium salinarum
- 2hur - NDK – Escherichia coli
- 2vu5 - NDK – Bacillus anthracis
- 2zua - NDK – Haloarcula quadrata
- 3mpd - NDK – Encephalitozoon cuniculi
- 3pj9 - NDK – Campylobacter jejuni
- 3r9l - NDK – Giardia lamblia
- 3ngr, 3ngs - LmNDK – Leishmania major
- 5c7p, 5caa, 5cab - LmNDK (mutant)
- 4kpc - NDK – Leishmania braziliensis
- 5go1 - NDK – Leishmania amazonensis
- 3prv - NDK – Trypanosoma cruzi
- 3q83 - SaNDK – Staphylococcus aureus
- 4di6 - BbNDK – Borrelia burgdorferi
- 3ztq, 3zto, 3ztp, 3ztr, 3zts - NDK – Aquifex aeolicus
- 4dut - BtNDK – Burkholderia thailandensis
- 2cwk - PhNDK – Pyrococcus horikoshii
- 3vgs, 3vgt - HaNDK – Halomonas
- 3vgu, 3vgv - HaNDK (mutant)
- 3vvt - NDK – reconstructed archaeal ancestral
- 3vvu - NDK – reconstructed bacterial ancestral
- 4f36 – TbNDK – Trypanosoma brucei
- 4s0m, 4w98, 4wbf, 5yih, 5yol – NDK – Acinetobacter baumannii
- 5iol, 5iom - SmNDK – Schisostoma mansoni
- 5u2i – NDK – Naegleria fowleri
- 5v6d – NDK – Neisseria gonnorrhoeae
- 5x00 – NDK – Vibrio cholerae
- 6ay1 – NDK – Helicobacter pylori
- 6aes – NDK – Pseudomonas aeruginosa
- 6agy, 6xp4 – AfNDK – Aspergillus fumigatus
- 6k3h, 6joh – NDK – Aspergillus flavus
- NDK complex with adenine derivative
- NDK complex with thymidine derivative
- 1f3f - DdNDK (mutant) + TDP derivative + TTP derivative
- 1lwx - DdNDK (mutant) + azido-TDP
- 1f6t - DdNDK + TDP derivative
- 1mn7 - DdNDK (mutant) + TTP derivative
- 1ndc - DdNDK + TDP
- 3ddi - ApNDK (mutant) + TDP – Acanthamoeba polyphaga
- 3em1, 3evw, 3fbc, 3fbf, 3g2x, 3evo - ApNDK (mutant) + TDP derivative
- 6xpv - AfNDK + TDP
- NDK complex with cytosine derivative
- 4uog - sNDK + CDP derivative
- 1nhk - MxNDK + CMP
- 2az3 - HsNDK + CDP
- 3ee3 - ApNDK + CDP
- 3etm, 3gpa, 3fc9 - ApNDK (mutant) + CDP
- 3evm - ApNDK (mutant) + CDP derivative
- 3q89 - SaNDK + CDP
- 4fkx - TbNDK + CDP
- 6xpw - AfNDK + CDP
- NDK complex with guanine derivative
- 1nue , 3bbf - hNDK + GDP
- 3bbb - hNDK B + GMP derivative + AMP derivative
- 1wkk - TtNDK + GDP
- 2dxe - PhNDK + GDP
- 2dxf - PhNDK + GTP analog
- 3gp9 - ApNDK + GDP
- 3b6b - ApNDK + GDP derivative
- 3fbe, 3dkd, 3ejm - ApNDK (mutant) + GDP
- 3emt, 3ena - ApNDK (mutant) + GDP derivative
- 3q86 - SaNDK + GTP
- 4fky - TbNDK + GTP
- 1s59 - AtNDK + GDP derivative + GTP derivative
- 6xps - AfNDK + GDP
- NDK complex with uridine derivative
- 1b99 - DdNDK + UDP derivative
- 3eic - ApNDK + UDP
- 3elh - ApNDK + UDP derivative
- 3fbb, 3fcv - ApNDK (mutant) + UDP derivative
- 3fcw - ApNDK (mutant) + UDP
- 3q8v - SaNDK + UDP
- 4f4a - TbNDK + UDP
- 6xpt - AfNDK + UDP
- NDK complex with inosine derivative
- NDK other complexes
- 5ui4 - hNDK + imidazole derivative
- 1mn9, 3fkb - DdNDK (mutant) + antiviral drug
- 4cp5 - DdNDK (mutant) + PMPAPP
