Nucleoside diphosphate kinase 3D structures

3D structures of nucleoside diphosphate kinase

Updated on 06-April-2026

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• Nucleoside diphosphate kinase
  • 1nsk, 1jxv, 3l7u, 4eno - hNDK A – human
    
  • 9gd6 - hNDK A (mutant) – Cryo EM
    
  • 3bbc - hNDK B (mutant)
    
  • 8qvy - hNDK C
    
  • 1ehw - hNDK D (mutant)
  • 3bbc - hNDK B (mutant)
    
  • 1vya – NDK – maize
    
  • 1w7w - NDK – pea
    
  • 1pku - NDK I – rice
    
  • 3b54 - NDK – yeast
    
  • 1ndk, 1npk, 1s5z – DdNDK – Dictyostelium discoideum
    
  • 1nlk, 1nsp - DdNDK with phosphohistidine intermediate
    
  • 1leo, 1ncl, 1hlw, 1hhq, 1pae, 4c6a - DdNDK (mutant)
    
  • 2nck – MxNDK – Myxococcus xanthus
    
  • 1ndl, 3wx8 – DmNDK – Drosophila melanogaster
    
  • 1nsq - DmNDK with phosphohistidine intermediate
    
  • 1k44, 4anc – MtNDK – Mycobacterium tuberculosis
    
  • 4and, 4ane, 6qa2 - MtNDK (mutant)
    
  • 1nb2 - NDK - Virgibacillus halodenitrificans
    
  • 1xiq - NDK A – Plasmodium falciparum
    
  • 1u8w - AtNDK I – Arabidopsis thaliana
    
  • 1s57 - AtNDK II
    
  • 1wkj - TtNDK – Thermus thermophilus
    
  • 1xqi - NDK (mutant) – Pyrobaculum aerophilum
    
  • 2az1 - HsNDK – Halobacterium salinarum
    
  • 2hur - NDK – Escherichia coli
    
  • 2vu5 - NDK – Bacillus anthracis
    
  • 2zua - NDK – Haloarcula quadrata
    
  • 3mpd - NDK – Encephalitozoon cuniculi
    
  • 3pj9 - NDK – Campylobacter jejuni
    
  • 3r9l - NDK – Giardia lamblia
    
  • 3ngr, 3ngs - LmNDK – Leishmania major
    
  • 5c7p, 5caa, 5cab - LmNDK (mutant)
    
  • 4kpc - NDK – Leishmania braziliensis
    
  • 5go1 - NDK – Leishmania amazonensis
    
  • 3prv - NDK – Trypanosoma cruzi
    
  • 3q83 - SaNDK – Staphylococcus aureus
    
  • 4di6 - BbNDK – Borrelia burgdorferi
    
  • 3ztq, 3zto, 3ztp, 3ztr, 3zts - NDK – Aquifex aeolicus
    
  • 4dut - BtNDK – Burkholderia thailandensis
    
  • 2cwk - PhNDK – Pyrococcus horikoshii
    
  • 3vgs, 3vgt - HaNDK – Halomonas
    
  • 3vgu, 3vgv - HaNDK (mutant)
    
  • 3vvt - NDK – reconstructed archaeal ancestral
    
  • 3vvu - NDK – reconstructed bacterial ancestral
    
  • 4f36 – TbNDK – Trypanosoma brucei
    
  • 4s0m, 4w98, 4wbf, 5yih, 5yol – NDK – Acinetobacter baumannii
    
  • 5iol, 5iom - SmNDK – Schisostoma mansoni
    
  • 5u2i – NDK – Naegleria fowleri
    
  • 5v6d – NDK – Neisseria gonnorrhoeae
    
  • 5x00 – NDK – Vibrio cholerae
    
  • 6ay1 – NDK – Helicobacter pylori
    
  • 6aes – NDK – Pseudomonas aeruginosa
    
  • 6agy, 6xp4 – AfNDK – Aspergillus fumigatus
    
  • 6k3h, 6joh – NDK – Aspergillus flavus
    
  • 9o9r, 9oba, 9od6, 9zog – CpNDK – Cryptosporidium parvum
    
• NDK complex with adenine derivative
  • 2hvd - hNDK A + ADP
    
  • 1ucn, 2hve - hNDK A (mutant) + ADP
    
  • 7ztk, 8oov - hNDK A + CoA
    
  • 7kpf - hNDK B + CoA derivative
    
  • 1zs6, 8qw1, 8qw3 - hNDK C + ADP
  • 8qvz - hNDK C + AMP
  • 7zl8 - mNDK A + CoA derivative - mouse
    
  • 7zlw - mNDK A + ADP
    
  • 4uof, 4uoh - sNDK + ADP derivative – shrimp
    
  • 1ndp, 1kdn, 2bef – DdNDK + ADP
    
  • 1b4s - DdNDK (mutant) + ADP
    
  • 1bux, 1hiy - DdNDK + ADP derivative
    
  • 1nlk - MxNDK + ADP
    
  • 2dxd - PhNDK + ATP analog
    
  • 2dy9, 2dya - PhNDK + ADP
    
  • 3ngt - LmNDK + AMP
    
  • 3ngu - LmNDK + ADP
    
  • 3q8u, 3q8y - SaNDK + ADP
    
  • 4dz6 - BbNDK + ADP
    
  • 1wkl - TtNDK + ADP + ATP
    
  • 4ek2 - BtNDK + AMP derivative
    
  • 4hr2 - BtNDK + ADP
    
  • 5kk8 - SmNDK + ADP
    
  • 6xp7 - AfNDK + ADP
    
  • 9pg0 - CpNDK + AMP
    
  • 9pfy - CpNDK + ATP
    
  • 9obc - CpNDK + ADP
    
  • 9oan - CpNDK + GDP + AMP-PNP
    
  • 9ob9 - CpNDK + ADP + CTP
    
• NDK complex with thymidine derivative
  • 1f3f - DdNDK (mutant) + TDP derivative + TTP derivative
    
  • 1lwx - DdNDK (mutant) + azido-TDP
    
  • 1f6t - DdNDK + TDP derivative
    
  • 1mn7 - DdNDK (mutant) + TTP derivative
    
  • 1ndc - DdNDK + TDP
    
  • 3ddi - ApNDK (mutant) + TDP – Acanthamoeba polyphaga
    
  • 3em1, 3evw, 3fbc, 3fbf, 3g2x, 3evo - ApNDK (mutant) + TDP derivative
    
  • 6xpv - AfNDK + TDP
    
  • 9oai - CpNDK + TMP
    
• NDK complex with cytosine derivative
  • 4uog - sNDK + CDP derivative
    
  • 1nhk - MxNDK + CMP
    
  • 2az3 - HsNDK + CDP
    
  • 3ee3 - ApNDK + CDP
    
  • 3etm, 3gpa, 3fc9 - ApNDK (mutant) + CDP
    
  • 3evm - ApNDK (mutant) + CDP derivative
    
  • 3q89 - SaNDK + CDP
    
  • 4fkx - TbNDK + CDP
    
  • 6xpw - AfNDK + CDP
    
  • 9oak - CpNDK + CDP + CTP
    
• NDK complex with guanine derivative
  • 1nue , 3bbf - hNDK B + GDP
    
  • 3bbb - hNDK B + GMP derivative + AMP derivative
    
  • 8qw0 - hNDK C + GDP
    
  • 1wkk - TtNDK + GDP
    
  • 2dxe - PhNDK + GDP
    
  • 2dxf - PhNDK + GTP analog
    
  • 3gp9 - ApNDK + GDP
    
  • 3b6b - ApNDK + GDP derivative
    
  • 3fbe, 3dkd, 3ejm - ApNDK (mutant) + GDP
    
  • 3emt, 3ena - ApNDK (mutant) + GDP derivative
    
  • 3q86 - SaNDK + GTP
    
  • 4fky - TbNDK + GTP
    
  • 1s59 - AtNDK + GDP derivative + GTP derivative
    
  • 6xps - AfNDK + GDP
    
  • 9yn9 - CpNDK + GMP
    
• NDK complex with uridine derivative
  • 8qw2 - hNDK C + UDP
  • 1b99 - DdNDK + UDP derivative
    
  • 3eic - ApNDK + UDP
    
  • 3elh - ApNDK + UDP derivative
    
  • 3fbb, 3fcv - ApNDK (mutant) + UDP derivative
    
  • 3fcw - ApNDK (mutant) + UDP
    
  • 3q8v - SaNDK + UDP
    
  • 4f4a - TbNDK + UDP
    
  • 6xpt - AfNDK + UDP
    
• NDK complex with inosine derivative
  • 6xpu - AfNDK + IDP
    
• NDK other complexes
  • 5ui4 - hNDK A + imidazole derivative
    
  • 8oov - hNDK A + CoA
    
  • 8pie - hNDK B + AT-9010
    
  • 8pyw - hNDK B + AT-9052
    
  • 8j07 – hNDK7 in respiratory doublet microtubule – Cryo EM
    
  • 9cpb – bNDK7 in fallopian tube cilia – bovine - Cryo EM
    
  • 8otz, 9fqr – bNDK7 in sperm - Cryo EM
    
  • 9cpc – NDK7 in brain ventricles cilia – pig - Cryo EM
    
  • 8i7r, 8iyj, 8to0 – mNDK7 in sperm flagella – Cryo EM
    
  • 8x2u – mNDK5 in radial spoke – Cryo EM
    
  • 8wzb – mNDK5 in head-neck complex – Cryo EM
    
  • 8snb – NDK in doublet microtubule – sea urchin – Cryo EM
    
  • 8g2z, 8g3d, 8sf7 – NDK7 in doublet microtubule – Tetrahymena thermophila – Cryo EM
    
  • 9e2g, 9e5c – NDK in doublet microtubule – Trypanosoma brucei – Cryo EM
    
  • 9y6s – NDK in doublet microtubule – Leishmania tarentolae – Cryo EM
    
  • 8glv – CrNDK in doublet microtubule – Chlamydomonas reinhardti – Cryo EM
    
  • 7jrj – CrNDK 6 in radial spoke head – Cryo EM
    
  • 9d5n – NDK in doublet microtubule – Trichomonas vaginalis – Cryo EM
    
  • 1mn9, 3fkb - DdNDK (mutant) + antiviral drug
  • 4cp5 - DdNDK (mutant) + PMPAPP
    

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel