2zdh: Difference between revisions

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<StructureSection load='2zdh' size='340' side='right'caption='[[2zdh]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='2zdh' size='340' side='right'caption='[[2zdh]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2zdh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2ZDH FirstGlance]. <br>
<table><tr><td colspan='2'>[[2zdh]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZDH FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2yzg|2yzg]], [[2yzm|2yzm]], [[2zdg|2zdg]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zdh OCA], [https://pdbe.org/2zdh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zdh RCSB], [https://www.ebi.ac.uk/pdbsum/2zdh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zdh ProSAT], [https://www.topsan.org/Proteins/RSGI/2zdh TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2zdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zdh OCA], [http://pdbe.org/2zdh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zdh RCSB], [http://www.ebi.ac.uk/pdbsum/2zdh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zdh ProSAT], [http://www.topsan.org/Proteins/RSGI/2zdh TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/DDL_THET8 DDL_THET8]] Cell wall formation.[HAMAP-Rule:MF_00047]  
[https://www.uniprot.org/uniprot/DDL_THET8 DDL_THET8] Cell wall formation.[HAMAP-Rule:MF_00047]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: D-alanine--D-alanine ligase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus HB8]]
[[Category: Kitamuta, Y]]
[[Category: Kitamuta Y]]
[[Category: Kuramitsu, S]]
[[Category: Kuramitsu S]]
[[Category: Structural genomic]]
[[Category: Yokoyama S]]
[[Category: Yokoyama, S]]
[[Category: Cell shape]]
[[Category: Cell wall biogenesis/degradation]]
[[Category: D-alanine-d-alanine ligase]]
[[Category: Ligase]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Peptidoglycan biosynthesis]]
[[Category: Peptidoglycan synthesis]]
[[Category: Rsgi]]

Latest revision as of 13:32, 1 November 2023

Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8

2zdh, resolution 1.90Å

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