Deaminase 3D structures: Difference between revisions

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**[[4f3w]] – CDA – ''Mycobacterium marinum'' <BR />
**[[4f3w]] – CDA – ''Mycobacterium marinum'' <BR />
**[[6kw6]] – CDA – ''Streptomyces noursei''<BR />
**[[6kw6]] – CDA – ''Streptomyces noursei''<BR />
**[[7zob]] – CDA – metagenome<BR />


*''Cytidine deaminase complex with nucleoside''
*''Cytidine deaminase complex with nucleoside''
Line 35: Line 36:
*Cytosine deaminase
*Cytosine deaminase


**[[1rb7]], [[1uaq]] – yCDDA  <BR />
**[[1rb7]], [[1uaq]], [[8vlk]] – yCDDA  <BR />
**[[1ysb]], [[1ysd]]  – yCDDA  (mutant)<BR />
**[[1ysb]], [[1ysd]], [[8i3n]], [[8vll]], [[8vlm]]  – yCDDA  (mutant)<BR />
**[[1k6w]] – EcCDDA  <BR />
**[[1k6w]] – EcCDDA  <BR />
**[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]]  – EcCDDA  (mutant)<BR />
**[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]]  – EcCDDA  (mutant)<BR />
Line 42: Line 43:
*''Cytosine deaminase complex''
*''Cytosine deaminase complex''


**[[1ox7]] – yCDDA + Zn <BR />
**[[1ox7]], [[8vlj]] – yCDDA + Zn <BR />
**[[8i3o]] – yCDDA  (mutant) + Mn<BR />
**[[1p6o]] – yCDDA  + pyrimidine derivative<BR />
**[[1p6o]] – yCDDA  + pyrimidine derivative<BR />
**[[2o3k]] – yCDDA  (mutant) + pyrimidine derivative<BR />
**[[2o3k]], [[8i3p]] – yCDDA  (mutant) + pyrimidine derivative<BR />
**[[3r0d]] – EcCDDA + Zn <BR />
**[[3r0d]] – EcCDDA + Zn <BR />
**[[3rn6]] – EcCDDA + Zn + iso-guanine<BR />
**[[3rn6]] – EcCDDA + Zn + iso-guanine<BR />
Line 56: Line 58:


**[[2w4l]] – hDCMP<BR />
**[[2w4l]] – hDCMP<BR />
**[[88vl]] – hDCMP + HIV VIF + CBF-beta + EloB + EloC + RNA – Cryo EM<BR />
**[[7uu3]], [[7uu4]], [[7uu5]], [[8edj]] – rmDCMP + RNA – rhesus monkey<BR />
**[[8tvc]], [[8tx4]] – rmDCMP + DNA <BR />
**[[8e40]] – rmDCMP + HIV VIF + CBF-beta + RNA – Cryo EM<BR />
**[[5jfy]] – DCMP - cabbage<BR />
**[[5jfy]] – DCMP - cabbage<BR />
**[[2hvv]], [[2hvw]] – SmDCMP  - ''Streptococcus mutans'' <BR />
**[[2hvv]], [[2hvw]] – SmDCMP  - ''Streptococcus mutans'' <BR />
Line 119: Line 125:
**[[7lqm]] – GPD – ''Pasteurelia multocida'' <BR />
**[[7lqm]] – GPD – ''Pasteurelia multocida'' <BR />
**[[7lqn]] – GPD –'' Haemophilus influenzae''<BR />
**[[7lqn]] – GPD –'' Haemophilus influenzae''<BR />
**[[8eol]] – SdGPD – ''Shewanella denitrificans''<BR />
**[[8eym]] – SdGPD  + glucosamine-6-phosphate derivatives<BR />


*1-aminocyclopropane-1-carboxylate (ACC) deaminase
*1-aminocyclopropane-1-carboxylate (ACC) deaminase
Line 174: Line 183:
**[[3iau]] – THD + PLP derivative – tomato<BR />
**[[3iau]] – THD + PLP derivative – tomato<BR />
**[[1tdj]] – EcTHD + PLP <BR />
**[[1tdj]] – EcTHD + PLP <BR />
**[[8zkv]] – EcTHD (mutant) + PLP <BR />
**[[8zlv]] – EcTHD + PLP derivative <BR />
**[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR />
**[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR />
**[[2gn2]] – StTHD + PLP derivative + CMP<BR />
**[[2gn2]] – StTHD + PLP derivative + CMP<BR />
**[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR />
**[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR />
**[[8y1j]] – THD + PLP derivative – ''Pseudomonas aeruginosa''<BR />


*L-serine deaminase
*L-serine deaminase

Revision as of 08:44, 26 March 2025

3D Structures of deaminase

Updated on 26-March-2025

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Jaime Prilusky, Joel L. Sussman