6adq: Difference between revisions

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<SX load='6adq' size='340' side='right' viewer='molstar' caption='[[6adq]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
<SX load='6adq' size='340' side='right' viewer='molstar' caption='[[6adq]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6adq]] is a 24 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_smegmatis_mc2_51 Mycobacterium smegmatis mc2 51]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ADQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6ADQ FirstGlance]. <br>
<table><tr><td colspan='2'>[[6adq]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycolicibacterium_smegmatis_MC2_51 Mycolicibacterium smegmatis MC2 51]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ADQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ADQ FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9XX:(2S)-1-(hexadecanoyloxy)propan-2-yl+(10S)-10-methyloctadecanoate'>9XX</scene>, <scene name='pdbligand=9Y0:(2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl+(E)-octadec-9-enoate'>9Y0</scene>, <scene name='pdbligand=9YF:(2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl+(9S)-9-methyloctadecanoate'>9YF</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEA:HEME-A'>HEA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MQ9:MENAQUINONE-9'>MQ9</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cytochrome-c_oxidase Cytochrome-c oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.9.3.1 1.9.3.1] </span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9XX:[(2~{S})-1-hexadecanoyloxypropan-2-yl]+(10~{S})-10-methyloctadecanoate'>9XX</scene>, <scene name='pdbligand=9Y0:[(2~{R})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-hexadecanoyloxy-propyl]+(~{Z})-octadec-9-enoate'>9Y0</scene>, <scene name='pdbligand=9YF:(2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl+(9S)-9-methyloctadecanoate'>9YF</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEA:HEME-A'>HEA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MQ9:MENAQUINONE-9'>MQ9</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6adq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6adq OCA], [http://pdbe.org/6adq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6adq RCSB], [http://www.ebi.ac.uk/pdbsum/6adq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6adq ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6adq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6adq OCA], [https://pdbe.org/6adq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6adq RCSB], [https://www.ebi.ac.uk/pdbsum/6adq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6adq ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/A0QQQ1_MYCS2 A0QQQ1_MYCS2]] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.[RuleBase:RU000393] [[http://www.uniprot.org/uniprot/A0R056_MYCS2 A0R056_MYCS2]] Part of cytochrome c oxidase, its function is unknown.[PIRNR:PIRNR017385]  
[https://www.uniprot.org/uniprot/A0R057_MYCS2 A0R057_MYCS2]  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</SX>
</SX>
[[Category: Cytochrome-c oxidase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Mycobacterium smegmatis mc2 51]]
[[Category: Mycolicibacterium smegmatis MC2 51]]
[[Category: Gao, R G]]
[[Category: Gao RG]]
[[Category: Gong, H R]]
[[Category: Gong HR]]
[[Category: Ji, W X]]
[[Category: Ji WX]]
[[Category: Li, J]]
[[Category: Li J]]
[[Category: Rao, Z H]]
[[Category: Rao ZH]]
[[Category: Wang, Q]]
[[Category: Wang Q]]
[[Category: Wang, S H]]
[[Category: Wang SH]]
[[Category: Xu, A]]
[[Category: Xu A]]
[[Category: Electron transport]]
[[Category: Etc]]
[[Category: Lipoprotein]]
[[Category: Mycobacterium]]
[[Category: Respiratory]]
[[Category: Sod]]
[[Category: Supercomplex]]
Retrieved from "https://proteopedia.org/6adq"