Mannosidase 3D structures: Difference between revisions

From Proteopedia
Jump to navigationJump to search
Michal Harel (talk | contribs)
No edit summary
Michal Harel (talk | contribs)
No edit summary
Line 35: Line 35:
**[[3bup]], [[3buq]], [[3czs]] - DmαMAN II catalytic domain (mutant) + mannose<br />
**[[3bup]], [[3buq]], [[3czs]] - DmαMAN II catalytic domain (mutant) + mannose<br />
**[[6rqz]], [[6rrh]] – DmαMAN II + mannose derivative<br />
**[[6rqz]], [[6rrh]] – DmαMAN II + mannose derivative<br />
**[[6rrj]], [[6rrn]], [[6rru]], [[6rrw]], [[6rrx]], [[6rry]], [[6rs0]]   – DmαMAN II + aziridine derivative<br />
**[[6rrj]], [[6rrn]], [[6rru]], [[6rrw]], [[6rrx]], [[6rry]], [[6rs0]], [[9ftq]], [[9ftr]]  – DmαMAN II + aziridine derivative<br />
**[[3bvt]], [[3bvu]], [[3bvv]], [[3bvw]], [[3bvx]] - DmαMAN II catalytic domain (mutant) + mannopyranoside<br />
**[[3bvt]], [[3bvu]], [[3bvv]], [[3bvw]], [[3bvx]] - DmαMAN II catalytic domain (mutant) + mannopyranoside<br />
**[[1r33]], [[1r34]] - DmαMAN II catalytic domain + mannopyranoside<br />
**[[1r33]], [[1r34]] - DmαMAN II catalytic domain + mannopyranoside<br />
Line 64: Line 64:
**[[4ayr]] – CaαMAN + noeuromycin<br />
**[[4ayr]] – CaαMAN + noeuromycin<br />
**[[5ne5]] – CaαMAN + kifunensine<br />
**[[5ne5]] – CaαMAN + kifunensine<br />
**[[8b5m]] – CaαMAN + inhibitor<br />
**[[5kkb]] – mαMAN + mannose derivative<br />
**[[5kkb]] – mαMAN + mannose derivative<br />
**[[5kij]] – hαMAN + mannose derivative<br />
**[[5kij]] – hαMAN + mannose derivative<br />
Line 69: Line 70:
**[[6dwo]] – EfαMAN – ''Enterococcus faecalis''<br />
**[[6dwo]] – EfαMAN – ''Enterococcus faecalis''<br />
**[[7fe2]] – EfαMAN (mutant) + mannose derivative<br />
**[[7fe2]] – EfαMAN (mutant) + mannose derivative<br />
**[[7nsn]] – αMAN + mannose derivative – Neobacillus novalis<br />
**[[7nsn]] – αMAN + mannose derivative – ''Neobacillus novalis''<br />
 
*α-1,3-MAN
 
**[[7zgm]] – αMAN – ''Phocaeicola massiliensis''<br />


*β-MAN
*β-MAN

Revision as of 11:34, 14 December 2025

3D structures of mannosidase

Updated on 14-December-2025

  • α-MAN class I
    • 1fmi - hαMAN I - human
    • 1fo2 - hαMAN I + deoxymannojirimycin
    • 1fo3 - hαMAN I+ kifunensine
    • 1x9d - hαMAN I residues 243-699 + polysaccharide analog
    • 1nxc - mαMAN I + mannose – mouse
    • 6b9p - jbMAN + inhibitor
    • 5jm0 - yαMAN I – yeast
    • 1dl2 - yαMAN I catalytic domain + mannose
    • 1g6i - yαMAN I + deoxymannojirimycin
    • 2ri8 - PcαMAN I + glycerol – Penicillium citrinum
    • 1kre, 1kkt - PcαMAN I + mannose
    • 2ri9 - PcαMAN I + substrate analog
    • 1krf - PcαMAN I + kifunensine + mannose
  • α-MAN class II
    • 3bub, 1hty, 6rpc - DmαMAN II catalytic domain – Drosophila melanogaster
    • 3bud - DmαMAN II catalytic domain (mutant)
    • 3bui - DmαMAN II catalytic domain (mutant) + Tris
    • 3bup, 3buq, 3czs - DmαMAN II catalytic domain (mutant) + mannose
    • 6rqz, 6rrh – DmαMAN II + mannose derivative
    • 6rrj, 6rrn, 6rru, 6rrw, 6rrx, 6rry, 6rs0, 9ftq, 9ftr – DmαMAN II + aziridine derivative
    • 3bvt, 3bvu, 3bvv, 3bvw, 3bvx - DmαMAN II catalytic domain (mutant) + mannopyranoside
    • 1r33, 1r34 - DmαMAN II catalytic domain + mannopyranoside
    • 3ddf, 3ddg, 2f18, 2f1a, 2f1b - DmαMAN II catalytic domain + pyrrolidin
    • 2alw - DmαMAN II catalytic domain + noeuromycin
    • 3cv5 - DmαMAN II catalytic domain + polysaccharide
    • 3czn - DmαMAN II catalytic domain (mutant) + polysaccharide
    • 2wyi - SpαMAN II + swainsonine
    • 3blb, 1hww - DmαMAN II + swainsonine
    • 3ejp, 3ejq, 3ejr, 3ejs, 3ejt, 3eju, 2ow6, 2ow7 - DmαMAN II catalytic domain + swainsonine analog
    • 3dx0, 3dx2, 2f7o - DmαMAN II catalytic domain + mannostatine
    • 3dx1, 3dx3, 3dx4, 2f7p - DmαMAN II catalytic domain + mannostatine analog
    • 3d4y, 3d4z - DmαMAN II catalytic domain + imidazole derivative
    • 3d50, 3d51, 3d52 - DmαMAN II catalytic domain + inhibitor
    • 2fyv, 2f7q, 2f7r - DmαMAN II catalytic domain + amino-salacinol carboxylate analog
    • 1tqv, 1tqw, 1tqs, 1tqt, 1tqu - DmαMAN II catalytic domain (mutant) + seleno-salacinol
    • 1ps3 - DmαMAN II catalytic domain + kifunensine
    • 1qwn - DmαMAN II catalytic domain + intermediate
    • 1hxk - DmαMAN II catalytic domain + deoxymannojirimycin
    • 1qwu - DmαMAN II catalytic domain (mutant) + guloside
    • 1qx1 - DmαMAN II catalytic domain (mutant) + mannosyl
    • 2wyh - SpαMAN II – Streptococcus pyrogenes
  • α-1,2-MAN
    • 4ayo – CaαMAN - Caulobacter
    • 4ayp, 4ayq, 5meh – CaαMAN + mannose derivative
    • 4ayr – CaαMAN + noeuromycin
    • 5ne5 – CaαMAN + kifunensine
    • 8b5m – CaαMAN + inhibitor
    • 5kkb – mαMAN + mannose derivative
    • 5kij – hαMAN + mannose derivative
    • 5kk7 – hαMAN (mutant) + disaccharide derivative
    • 6dwo – EfαMAN – Enterococcus faecalis
    • 7fe2 – EfαMAN (mutant) + mannose derivative
    • 7nsn – αMAN + mannose derivative – Neobacillus novalis
  • α-1,3-MAN
    • 7zgm – αMAN – Phocaeicola massiliensis
  • β-MAN
    • 6ddt - mMAN
    • 6ddu - mMAN + β-mannose
    • 4jho - rβMAN – rice
    • 4jie - rβMAN + β-mannose
    • 2je8 - BtβMAN residues 26-864
    • 2wbk - BtβMAN residues 26-864 + mannopyranoside
    • 2vqt, 2vr4, 2vjx, 2vl4, 2vmf, 2vo5, 2vot, 2vqu - BtβMAN residues 26-864 + piperidine derivative
    • 1oh4, 1of4 - TmβMAN catalytic domain + mannose – Thermotoga maritima
    • 1of3 - TmβMAN catalytic domain
    • 1uz4 - CmβMAN + inhibitor – Cellvibrio mixtus
    • 1uuq - CmβMAN
    • 2whk - βMAN – Bacillus subtilis
    • 4cvu, 4uoj – βMAN - Trichoderma harzianum
    • 5n6u - βMAN + β-mannose – Dictyoglomus thermophilum
    • 6byc - XaMAN – Xanthomonas axonopodis
    • 6byg, 6byi - XaMAN (mutant)
    • 6bye - XaMAN + β-mannose
    • 4zxo - BoMAN – Bacterioides ovatus
    • 2whj - BaMAN – Bacillus agaradhaerens
    • 2whl - BaMAN + β-mannose
    • 6t5o - BsMAN – Bacterioides salyersiae
    • 6t7g - BsMAN + mannose derivative
    • 6t6g - BsMAN + noeuromycin
    • 6mp2, 6mpa - BlMAN
    • 6moy, 6mp7, 6mpc - BlMAN (mutant)
    • 7op7 - BtMAN + aziridine derivative
  • Mannan endo-1,4-β-MAN
  • Endo-α-MAN
  • Endo-α-1,2-MAN
    • 6zdc, 6zdf, 6zdk, 6zfq – hαMAN catalytic domain
    • 6zj5 – hαMAN catalytic domain + glucosamine derivative
    • 6zj1 – hαMAN catalytic domain (mutant) + glycan fragment
    • 6zfn – hαMAN catalytic domain (mutant) + mannobiose
    • 6zfa – hαMAN catalytic domain + mannobiose + Glc derivative
    • 6zfl – hαMAN catalytic domain + Glc derivative
  • Endo-α-1,6-MAN
    • 6ry0 - CtαMAN – Chaetonium thermofilum
    • 6ry1 – CtαMAN + mannose
    • 6ry2, 6ry5 – CtαMAN + mannobiose
    • 6ry6 – CtαMAN + glucosamine
    • 6ry7 – CtαMAN + laminaribiose
  • Exo-β-1,4-MAN
    • 4lyp - RmβMAN – Rhizomucor miehei
    • 4lyq, 4lyr - RmβMAN (mutant)
    • 4nrr - RmβMAN (mutant) + mannosyl-fructose
    • 4nrs - RmβMAN (mutant) + mannobiose
    • 6gvb - βMAN – Cutibacterium acnes
    • 7bob - MAN – Opitutaceae bacterium
    • 7odj – CmβMAN + mannose derivative
  • Exo-α-1,6-MAN
    • 5m7i - CpαMAN (mutant) + mannobiose – Clostridium perfringenes
    • 5m7y - CpαMAN (mutant) + mannotriose
    • 6rqk - CpMAN + mannoimidazole
  • β-MAN/β-glucosidase

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Openfox