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You may include any references to papers as in: the use of JSmol in Proteopedia [1] or to the article describing Jmol [2] to the rescue.
Function
Disease
Relevance
Structural highlights
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:https://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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3D structures of rhodopsin
Updated on 17-December-2014
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- Rhodopsin (Rn)
- 3aym, 3ayn, 2z73, 2ziy – Rn + detergents + retinal – Flying squid
- 3am6 – Rn-2 + cholesterol + retinal – Acetabularia acetabulum
- 2x72 – bRn + detergents + retinal + guanine nucleotide-binding protein peptide – bovine
- 3qc9 – bRn + Mg + ADP
- 3oax, 3c9l, 2ped, 2i35, 2i36, 2i37, 1u19, 1gzm, 1l9h, 1hzx - bRn + detergents + retinal
- 3cap - bovine Rn + detergents
- 1jfp, 1f88 - bRn + retinal
- 3c9m - bRn (mutant) + detergents + retinal
- RNase I
- 3mwq, 3mwq, 3mx8, 3i67, 3i6f, 3i6h, 3i6j, 3i7w, 3eux, 3euy, 3euz, 3ev0, 3ev1, 3ev2, 3ev3, 3ev4, 3ev5, 3ev6, 3dh5, 2e3w, 2g4w, 2g4x, 2gbq, 2blp, 2blz, 1jvt, 1jvv, 1js0, 1fs3, 1kf2, 1kf3, 1kf4, 1kf5, 1kf7, 1kf8, 1aqp, 1a2w, 1rnw, 1rnz, 1rno, 1rnq, 1rbx, 1ssc, 3srn, 4srn, 1srn, 5rsa, 1afu, 1bel, 1c0b, 1c0c, 1lsq, 1rat, 1rbn, 1rha, 1rhb, 1rnx, 1rny, 1rsm, 1xps, 1xpt, 2g8q, 2rat, 3mzq, 3mzr, 3rat, 3rn3, 4rat, 5rat, 6rat, 7rat, 7rsa, 8rat, 8rsa, 9rat, 9rsa, 3mwr, 4ao1- bRNase I pancreatic - bovine
- 3a1r - bRNase I pancreatic - neutron
This is a sample scene created with SAT to color by Group, and another to make a transparent representation of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
References
proteopedia link