Deaminase 3D structures

3D Structures of deaminase

Updated on 13-July-2020

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• Cytidine deaminase
  • 1r5t – yCDA - yeast
    
  • 2a8n – AtCDA – Agrobacterium tumefaciens
    
  • 2g84 – NeCDA – Nitrosomonas europaea
    
  • 2d30 – CDA – Bacillus anthracis
    
  • 3dmo – CDA – Burkholderia pseudomallei
    
  • 3ijf – MtCDA – Mycobacterium tuberculosis
    
  • 4wif, 4wig – MtCDA (mutant)
    
  • 3mpz – CDA – Mycobacterium smegmatis
    
  • 3r2n – CDA – Mycobacterium leprae
    
  • 4f3w – CDA – Mycobacterium marinum
    
• Cytidine deaminase complex with nucleoside
  • 1mq0 – hCDA + β-ribofuranosyl diazepinone - human
    
  • 1zab – mCDA + deazauridine - mouse
    
  • 2fr5 – mCDA + tetrahydrouridine
    
  • 2fr6 – mCDA + cytidine + uridine
    
  • 1ctt – EcCDA + dihydro-pyrimidinone – Escherichia coli
    
  • 1ctu – EcCDA + hydroxyl-dihydro-zebularine
    
  • 1af2 – EcCDA + uridine
    
  • 1aln – EcCDA + deazacytidine
    
  • 1jtk – BsCDA + tetrahydrodeoxyuridine - Bacillus subtilis
    
  • 1uwz, 1ux0, 1ux1 – BsCDA (mutant) + tetrahydrodeoxyuridine
    
  • 4eg2 – CDA + uridine - Vibrio cholerae
    
• Cytosine deaminase
  • 1rb7, 1uaq – yCDDA
    
  • 1ysb, 1ysd – yCDDA (mutant)
    
  • 1k6w – EcCDDA
    
  • 1r9x, 1r9y, 1r9z, 1ra0, 1ra5, 3g77 – EcCDDA (mutant)
    
• Cytosine deaminase complex
  • 1ox7 – yCDDA + Zn
    
  • 1p6o – yCDDA + pyrimidine derivative
    
  • 2o3k – yCDDA (mutant) + pyrimidine derivative
    
  • 3r0d – EcCDDA + Zn
    
  • 3rn6 – EcCDDA + Zn + iso-guanine
    
  • 1k70 – EcCDDA + pyrimidine derivative
    
  • 1rak – EcCDDA (mutant) + pyrimidine derivative
    
  • 3o7u – EcCDDA + Zn + phosphono-cytosine
    
  • 4r7w, 4r85, 4r88 – KpCDDA + cytosine derivative – Klebsiella pneumoniae
    
• Deoxycytidylate deaminase
  • 2w4l – hDCMP
    
  • 5jfy – DCMP - cabbage
    
  • 2hvv, 2hvw – SmDCMP - Streptococcus mutans
    
  • 1vq2 – DCMP - Enterobacteria phage T4
    
  • 4p9c – CyDCMP + deoxyCMP - Cyanophage S-TIM5
    
  • 4p9d – CyDCMP + TMP
    
  • 4p9e – CyDCMP
    
• Guanine deaminase
  • 3e0l – hGDA
    
  • 1tiy, 1wkq – BsGDA
    
• Guanine deaminase complex with nucleoside
  • 2uz9 – hGDA + xanthine
    
  • 4aql – hGDA + valacyclovir
    
  • 2i9u – GDA + guanine – Clostridium acetobutylicum
    
  • 2ood – GDA + guanine – Bradrhizobium japonicum
    
  • 4lc5, 4lcn, 4hrq – NeGDA + guanine derivative
    
  • 4hrw – NeGDA (mutant) + guanine derivative
    
  • 4lco – NeGDA + ameline
    
  • 4lcp – NeGDA + diaminopurine
    
  • 4ld2 – NeGDA + cytidine
    
  • 4ld4 – NeGDA + cytosine
    
• Adenine deaminase
  • 2ics – ADA - Enterococcus faecalis
    
  • 3nqb, 3t81, 3t8l – AtADA
    
• Adenosine deaminase See Adenosine deaminase
• Glucosamine 6-phosphate deaminase
  • 1dea, 1cd5, 1fs6, 1fsf – EcGPD
    
  • 1jt9 – EcGPD (mutant)
    
  • 1hor – EcGPD + deoxy-amino glucitol-phosphate
    
  • 1hot, 1frz, 1fs5, 2wu1 – EcGPD + N-acetyl-glucosamine-6-phosphate
    
  • 1fqo – EcGPD + fructose 6-phosphate
    
  • 2ri0 – SmGPD – Streptococcus mutans
    
  • 2ri1 – SmGPD + glucosamine-6-phosphate
    
  • 6nbg – KpGPD
    
  • 3hn6 – GPD – Borrelia burgdorferi
    
  • 1j5x – GPD – Thermotoga maritima
    
  • 2bkv – BsGPD
    
  • 2bkx – BsGPD + fructose 6-phosphate
    
  • 4r7t – VcGPD
    
  • 5hj5 – VcGPD + fructose 6-phosphate + glucose-6-phosphate
    
• 1-aminocyclopropane-1-carboxylate (ACC) deaminase
  • 1f2d – WsACCD + PLP – Williopsis saturnus
    
  • 1j0c – WsACCD (mutant) + PLP
    
  • 1j0d – WsACCD (mutant) + inhibitor
    
  • 1j0e – WsACCD (mutant) + PLP + ACC
    
  • 1j0a – PhACCD + PLP + 2-propanol – Pyrococcus horikoshii
    
  • 1j0b – PhACCD + inhibitor
    
  • 1tyz – PsACCD + PLP - Pseudomonas
    
  • 1rqx – PsACCD + PLP + inhibitor
    
  • 1tz2 – PsACCD + PLP + ACC
    
  • 1tzj – PsACCD + PLP + vinylglycine
    
  • 1tzk – PsACCD + PLP + α-ketobutyrate
    
  • 1tzm – PsACCD + PLP + chloroalanine
    
• dCTP deaminase
  • 2qlp – MtCTPD
    
  • 3km3 – CTPD – Anaplasma phagocytophilum
    
  • 4dhk – CTPD - Burkholderia thailandensis
    
• dCTP deaminase complex
  • 1xs1 – EcCTPD + dUTP
    
  • 1xs4 – EcCTPD (mutant) + dCTP
    
  • 2j4h – EcCTPD (mutant) + dCDP
    
  • 1xs6, 2v9x – EcCTPD (mutant) + dUTP
    
  • 2j4q – EcCTPD (mutant) + dTTP + dTDP
    
  • 2qxx – MtCTPD + dTTP
    
• dCTP deaminase-dUTPase
  • 2hxb, 1ogh, 1pkh, 3gf0 – MjDCD-DUT – Methanocaldococcus jannaschii
    
  • 1pkj – MjDCD-DUT + dUTP
    
  • 2hxd – MjDCD-DUT (mutant) + dUTP derivative
    
  • 1pkk – MjDCD-DUT + dCTP
    
  • 4xjc – DCD-DUT + TTP – Bacillus halodurans
    
  • 4a6a – MtDCD-DUT (mutant) + TTP
    
• Porphobilinogen deaminase See Porphobilinogen Deaminase
• Blasticidin-S deaminase
  • 1wn5, 2z3g – AtBSD – Aspergillus terreus
    
  • 2z3j – AtBSD (mutant)
    
  • 1wn6 – AtBSD + blasticidin-S intermediate
    
  • 2z3h – AtBSD + deaminohydroxy blasticidin-S
    
  • 2z3i – AtBSD (mutant) + blasticidin-S
    
  • 3oj6 – BSD – Coccidioides immitis
    
• Threonine deaminase
  • 3iau – THD + PLP derivative – tomato
    
  • 1tdj – EcTHD + PLP
    
  • 2gn0, 2gn1 – StTHD + PLP derivative – Salmonella typhimurium
    
  • 2gn2 – StTHD + PLP derivative + CMP
    
  • 1ve5 – THD + PLP – Thermus thermophilus
    
• L-serine deaminase
  • 1p5j, 2rkb – hLSD (mutant) + PLP
    
  • 1pwe – rLSD - rat
    
  • 1pwh – rLSD + PLP derivative
    
• D-serine deaminase
  • 3r0x, 3r0z – DSD – Salmonella enterica
    
  • 3ss7, 3ss9 – EcDSD + PLP
    
  • 3gwq – DSD - Burkholderia xenovorans
    
• L-amino acid deaminase
  • 5fjm – PmLSD – Proteus myxofaciens
    
  • 5fjn – PmLSD + anthranilate
    
  • 5i39, 5hxw – LSD + FAD – Proteus vulgaris
    
• 2-aminomuconate deaminase
  • 6izh – PsAMD –
    

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Michal Harel, Jaime Prilusky, Joel L. Sussman