Single-stranded DNA-binding protein 3D structures

3D Structures of single-stranded DNA-binding protein

Updated on 06-April-2022

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• Single-stranded DNA-binding protein
  • 3ull, 1s3o, 2dud – HsmtSSB residues 16-148 – human
    
  • 5d8e, 5d8f – hSSB residues 1-109 (mutant)
    
  • 6iwv – hSSB 2 residues 10-77
    
  • 6s9r – SSB – Drosophila melanogaster
    
  • 6cqk, 6cqm, 6cqo – ySSB N terminal domain - yeast
    
  • 5m1x – ySSB N-OB domain (mutant)
    
  • 1gpc – SSB gp32 – Enterobacteria phage T4
    
  • 2a1k – SSB gp32 – Enterobacteria phage RB69
    
  • 1je5 – SSB – Enterobacteria phage T7
    
  • 5odk, 5odj – Enc34SSB – Enterobacteria phage Enc34
    
  • 1vqe, 1yha, 1vqb – F1SSB – Enterobacteria phage F1
    
  • 1vqa, 1vqc, 1vqd, 1vqe, 1vqf, 1vqg, 1vqh, 1vqi, 1vqj, 1ae2, 1ae3, 1gkh – F1SSB (mutant)
    
  • 2gn5 – M13SSB – Enterobacteria phage M13
    
  • 2gva, 2gvb – M13SSB (mutant) - NMR
    
  • 1adu, 1adv, 1anv, 2waz, 2wb0 – SSB C terminal – human adenovirus 5
    
  • 1urj – SSB – human herpesvirus 1
    
  • 1pfs – SSB (mutant) – Pseudomonas phage PF3 - NMR
    
  • 1kaw – EcSSB chymotryptic domain – Escherichia coli
    
  • 1qvc, 1sru – EcSSB
    
  • 1o7i – SsSSB residues 1-119 – Sulfolobus solfataricus
    
  • 1ue1, 1ue5, 1ue7, 1ue6 – SSB – Mycobacterium tuberculosis
    
  • 1x3e, 1x3f, 1x3g, 5gqo – MsSSB – Mycobacterium smegmatis
    
  • 1se8 – DrSSB – Deinococcus radiodurans
    
  • 4exw – SSB DdrB – Deinococcus geothermalis
    
  • 1z9f – SSB – Thermotoga maritima
    
  • 2cwa – SSB – Thermus thermophilus
    
  • 2fxq, 2ihe – TaSSB – Thermus aquaticus
    
  • 2ihf – TaSSB (mutant)
    
  • 2hql – SSB – Mycoplasma pneumoniae
    
  • 3eiv – ScSSB – Streptomyces coelicolor
    
  • 4dam – ScSSB (mutant)
    
  • 3lgj, 3pgz – SSB – Bartonella henselae
    
  • 3afp, 3afq – SSB – Mycobacterium leprae
    
  • 3tqy – SSB – Coxiella burnetii
    
  • 3tek – SSB N terminal – Thermoproteus tenax
    
  • 4gs3 – SSB N terminal – Thermoanaerobacter tengcongensis
    
  • 3dm3 – SSB A domain – Methancaldococcus jannaschii
    
  • 5xgt, 5yyu – SSB N-terminal – Staphylococcus aureus
    
  • 6bhw – BsSSB – Bacillus subtilis
    
  • 5yuo – PaSSB – Pseudomonas aeruginosa
    
  • 7f2n – SSB – Klebsiella pneumoniae
    
• Single-stranded DNA-binding protein complex with ssDNA
  • 1eyg – EcSSB chymotryptic domain + ssDNA
    
  • 1eqq – EcSSB + ssDNA
    
  • 2vw9 – HpSSB + ssDNA
    
  • 3vdy, 6bhx – BsSSB + ssDNA
    
  • 3a5u – MsSSB chymotryptic domain + ssDNA
    
  • 3udg – DrSSB + ssDNA
    
  • 2mna – SsSSB + ssDNA - NMR
    
  • 6jdg, 6irq – PaSSB + ssDNA
    
  • 5odn – SrSSB + ssDNA - Salinibacter ruber
    
  • 5odp – SrSSB (mutant) + ssDNA
    
  • 5odl – Enc34SSB + ssDNA
    
• Other single-stranded DNA-binding protein complexes
  • 6rup – hSSB residues 16-148 + peptide
    
  • 6tyd – hSSB 2 residues 1-94 + LDB1
    
  • 3ufm, 3uf7 – DrSSB C terminal + uracil-DNA glycosylase
    
  • 5yun – PaSSB + myricetin
    
  • 7vum – PaSSB + que
    
  • 7d8j, 7dep – SSB + fluorouracil – Staphylococcus aureus
    
• Replication protein A70
  • 1l1o – hRPA14 + hRPA32 central domain + hRPA70 C terminal
    
  • 1ewi, 2b29 - hRPA70 N terminal - NMR
    
  • 4ipc, 4ipd, 4ipg - hRPA70 N terminal (mutant)
    
  • 1fgu – hRPA70 central domain
    
  • 1jmc – hRPA70 central domain + DNA
    
  • 2b3g - hRPA70 N terminal + p53 peptide
    
  • 5eay - hRPA70 N terminal + DNA2 peptide
    
  • 4nb3, 5n85 - hRPA70 N terminal (mutant) + peptide
    
  • 5n8a - hRPA70 N terminal (mutant) + PrimPol
    
  • 4ijh, 4ijl, 4iph, 4luo, 4luv, 4luz, 4lw1, 4lwc, 4o0a, 4r4c, 4r4i, 4r4o, 4r4q, 4r4t, 5e7n - hRPA70 N terminal (mutant) + inhibitor
    
  • 1ynx – yRPA69 DBD-A – NMR
    
  • 6i52 – yRPA1 + yRPA2 + yRPA3 + ssDNA – Cryo EM
    

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Michal Harel